Locus 5803

Sequence ID 3L_DroMel_CAF1
Location 15,708,205 – 15,708,299
Length 94
Max. P 0.910105
window9222

overview

Window 2

Location 15,708,205 – 15,708,299
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 94.36
Mean single sequence MFE -20.42
Consensus MFE -17.80
Energy contribution -18.30
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.87
SVM decision value 1.07
SVM RNA-class probability 0.910105
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15708205 94 + 23771897
CCAGCAAUAUGCAAUGCGUUUUUUGCAGCGGCAACAGCUGCACAAUUCAAAAUGUCAAUUGAGGCAGUCCAUCCCAAAAGCAUAAAA-AAAGAGA
...((.....)).(((((..((.(((((((....).)))))).))..)....((((......)))).............))))....-....... ( -20.90)
>DroSec_CAF1 23766 95 + 1
CCAGCAAUAUGCAAUGCGUUUUUUGCAGCGGCAACAGCUGCACAAUUCAAAAUGUCAAUUGAGGCAGUCCAUCCCAAAAGCAUAAAAAAAAGAGA
...((.....)).(((((..((.(((((((....).)))))).))..)....((((......)))).............))))............ ( -20.90)
>DroSim_CAF1 24216 94 + 1
CCAGCAAUAUGCAAUGCGUU-UUUGCAGCGGCAACAGCUGCACAAUUCAAAAUGUCAAUUGAGGCAGUCCAUCCGAAAAGCAUAAAAAAAAGAGA
...((.....)).((((.((-(((((((((....).)))))...........((((......))))........)))))))))............ ( -20.20)
>DroEre_CAF1 15068 93 + 1
CCAGCAAUAUGCAAUGCUUUUUUUGCAGCGGCAACAGCUGCACAAUUCAAAAUGUCAAUUGAGGCAGUCCAUCCCAAAAGCAUAAAA--AAAAGA
...((.....)).((((((((..(((((((....).))))))..........((((......)))).........))))))))....--...... ( -22.70)
>DroYak_CAF1 60691 93 + 1
CCAGCAAUAUGCAAUGCGUUUUUUGCAGCGGCAACAGCUGCACAAUUCAAAAUGUCAAUUGAGGCAGUCCAUCCCAAAAGCAUAAAA--AAGAGA
...((.....)).(((((..((.(((((((....).)))))).))..)....((((......)))).............))))....--...... ( -20.90)
>DroAna_CAF1 21315 89 + 1
CCUGCAAUAUGCAACGCGUUUUUUCCAGCGGCAACAGCUGCACAAUUCAAAAUGUCAAUUGAGGCAGUCCGUCC-AAAAGCA---A--AAAGAGA
..(((.....)))....((((((....((((.....(((((.(((((.........)))))..)))))))))..-)))))).---.--....... ( -16.90)
>consensus
CCAGCAAUAUGCAAUGCGUUUUUUGCAGCGGCAACAGCUGCACAAUUCAAAAUGUCAAUUGAGGCAGUCCAUCCCAAAAGCAUAAAA_AAAGAGA
.......(((((...........(((((((....).))))))..........((((......)))).............)))))........... (-17.80 = -18.30 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:22 2006