Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,700,470 – 15,700,561 |
Length | 91 |
Max. P | 0.618019 |
Location | 15,700,470 – 15,700,561 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.89 |
Mean single sequence MFE | -19.92 |
Consensus MFE | -14.99 |
Energy contribution | -15.13 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.20 |
Mean z-score | -1.28 |
Structure conservation index | 0.75 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15700470 91 - 23771897 GCACCGCCUCGAACUUGGUCCUC---------GCCGUCAUUUUGUGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA ..........(((((((((....---------((((......)).))((((.((((((((.....))))))))...)))).))))))))).......... ( -17.90) >DroVir_CAF1 46298 92 - 1 GAGU-------CACUUGGCUGUUGACGGCAUUGUCGUCAU-UUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAGAAGUCGCCAAGUUUUCUAAUUAUA (((.-------.(((((((...(((((((...))))))).-....(.((((.((((((((.....))))))))...)))))))))))).)))........ ( -26.80) >DroEre_CAF1 7416 91 - 1 GCACCGCCUCAAACUUGGUCGUA---------GCCGUCAUUUUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA ..........((((((((.((..---------((((......)).))((((.((((((((.....))))))))...)))))))))))))).......... ( -17.70) >DroYak_CAF1 52335 91 - 1 GCAGCGCCUCAAACUUGGUCCUC---------GCCGUCAUUUUGUGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA ..........(((((((((....---------((((......)).))((((.((((((((.....))))))))...)))).))))))))).......... ( -17.50) >DroMoj_CAF1 55813 92 - 1 GAGU-------CGCUUGGCUGUCGUCGGCGUUGUCGUCAU-UUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAGAAGUCGCCAAGUUUUCUAAUUAUA (((.-------.(((((((.......((((....))))..-....(.((((.((((((((.....))))))))...)))))))))))).)))........ ( -23.70) >DroAna_CAF1 14228 93 - 1 GCAAUGCCUCGAACUUGGUCCGG-------CCUUUUUCAUUUUGUGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA ..........(((((((((...(-------((...........).))((((.((((((((.....))))))))...)))).))))))))).......... ( -15.90) >consensus GCACCGCCUC_AACUUGGUCCUC_________GCCGUCAUUUUGCGCACUUAAAGUAAUUAAGCGAAUUACUUCAAAAGUCGCCAAGUUUUCUAAUUAUA ..........(((((((((.............((((......)).))((((.((((((((.....))))))))...)))).))))))))).......... (-14.99 = -15.13 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:19 2006