Locus 5800

Sequence ID 3L_DroMel_CAF1
Location 15,698,444 – 15,698,536
Length 92
Max. P 0.717233
window9218

overview

Window 8

Location 15,698,444 – 15,698,536
Length 92
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 76.46
Mean single sequence MFE -29.82
Consensus MFE -15.36
Energy contribution -15.45
Covariance contribution 0.09
Combinations/Pair 1.12
Mean z-score -1.87
Structure conservation index 0.52
SVM decision value 0.39
SVM RNA-class probability 0.717233
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15698444 92 + 23771897
GUAGAACUGGGU--GAUGUUGCACCACCAGUCC----AA--AGAGUGUUUGUGGCAU---CAUCAGCUGUUGCCCCACAUAGCACUGCCCCACCAUC---------UCCACC
((((.....(((--(((((..((.((((.....----..--.).)))..))..))))---)))).(((((........))))).)))).........---------...... ( -25.20)
>DroSec_CAF1 14094 101 + 1
GUAGAACUGGGU--UAUGUUGCACCACCAGUCC----AA--AGAGUGGUUGUGGCAU---CAUCAGCUGUUGCCCCACAUAGCACUGCCCCACCAACUCCACCAGCUCCACC
((.((.((((..--...(((((((.((((.((.----..--.)).)))).)))....---.....(((((........)))))..........))))....)))).)).)). ( -25.70)
>DroSim_CAF1 14040 92 + 1
GUAGAACUGGGU--GAUGUUGCACCACCAGUCC----AA--AGAGUGGUUGUGGCAU---CAUCAGCUGUUGCCCCACAUAGCACUGCCCCACCAUC---------UCCACC
((((.....(((--(((((..((..((((.((.----..--.)).))))))..))))---)))).(((((........))))).)))).........---------...... ( -30.50)
>DroEre_CAF1 5461 74 + 1
GCAGAACUGGGC--GAUGUUGCACCACCAGUCC----AA--UGAGUGGUUGUGGCAG---CAUCAGCUGUUGCCCCACA----------------U-----------CCACC
...((..((((.--((((((((((.((((.((.----..--.)).)))).)).))))---)))).((....))))))..----------------)-----------).... ( -27.10)
>DroYak_CAF1 50290 90 + 1
GGAGAACUGGGU--GAUGUUGCACCACCAGUCC----AA--CGAGUGCUUGUGGCAG---CAUCAGCUGUUGCCCCACAUUGCGCUGCCCCACCAU-----------CCACC
(((.....((((--..(((((.((.....)).)----))--))(((((.((((((((---((.....)))))))..)))..))))))))).....)-----------))... ( -31.60)
>DroAna_CAF1 12125 97 + 1
UGAGGAAUGGUCUCUAUGCUGCACCACCAGUUGGUGGAAGGAAAGUGGUUGUGGCAUCAGCAUCAGCUGUUGCCCCACAUAGCUUUGACCUGCCA---------------CU
...((...((((.....((((..(((((....))))).......((((....((((.((((....)))).)))))))).))))...))))..)).---------------.. ( -38.80)
>consensus
GUAGAACUGGGU__GAUGUUGCACCACCAGUCC____AA__AGAGUGGUUGUGGCAU___CAUCAGCUGUUGCCCCACAUAGCACUGCCCCACCAU___________CCACC
.......((((.....(((..((..((((.((..........)).))))))..))).........((....))))))................................... (-15.36 = -15.45 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:18 2006