Locus 58

Sequence ID 3L_DroMel_CAF1
Location 204,015 – 204,120
Length 105
Max. P 0.587004
window81

overview

Window 1

Location 204,015 – 204,120
Length 105
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -29.09
Consensus MFE -19.06
Energy contribution -20.23
Covariance contribution 1.17
Combinations/Pair 1.25
Mean z-score -1.58
Structure conservation index 0.66
SVM decision value 0.11
SVM RNA-class probability 0.587004
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 204015 105 + 23771897
GAAAAGAUGAUA-CAUGUCCUUGCCUAUGAACGUGUACACACAACUGCUGAAUUCAUUCAGUGCUGCAAUGUGCAGUGGUGUAUAUCCAUAGUUGUCUGCCUGUAA
..........((-((.((...(..(((((...((((((((......((((((....))))))(((((.....))))).)))))))).)))))..)...)).)))). ( -28.20)
>DroVir_CAF1 11209 94 + 1
------GCUAUGCAUAUUACCUACCUAUAAAGAUGUAGACACAGCUGCUGAAUUCGUUGAGGGCGGCAAUAUGCAGGGGCGUGUAUCCAUAGUCAUCCGC------
------(((.((((((((.((..(((.....((.((((......)))).....))....)))..)).))))))))..)))....................------ ( -23.70)
>DroSec_CAF1 2977 105 + 1
UAAAAGAUGAUA-CGGGUCCUUGCCUAUGAACGUGUACACACAACUGCUAAAUUCAUUCAGUGCUGCAAUGUGCAGCGGUGUAUAUCCAUAGUUGUCUGCCUGUAA
..........((-(((((...(..(((((...((((((((...((((...........))))(((((.....))))).)))))))).)))))..)...))))))). ( -31.90)
>DroSim_CAF1 2981 105 + 1
UAACAGAUGAUA-CGGGUCCUUGCCUAUGAACGUGUACACACAACUGCUAAAUUCAUUCAGUGCUGCAAUGUGCAGCGGUGUAUAUCCAUAGUUGUCUGCCUGUAA
..........((-(((((...(..(((((...((((((((...((((...........))))(((((.....))))).)))))))).)))))..)...))))))). ( -31.90)
>DroEre_CAF1 3780 105 + 1
GAAGAUAUAAAG-CGGGUUCUUGCCUAUGAACGUGUACACACAACUGCUAAAUUCAUUCAGUGCAGCAAUGUGCAGCGGUGUAUACCCAUAGUUGUCUGCCUGUAA
...........(-(((((...(..(((((...((((((((....((((..............(((....)))))))..)))))))).)))))..)...)))))).. ( -27.73)
>DroYak_CAF1 2912 105 + 1
GUGGAUAUAAAG-CGGGUUCUUGCCUAUGAACGUGUACACACAAUUGCUAAAUUCAUUCAGUGCUGCAAUGUGCAGCGGUGUAUACCCAUAGUUGUCUGCCUGUAG
...........(-(((((...(..(((((...((((((((......(((.((....)).)))(((((.....))))).)))))))).)))))..)...)))))).. ( -31.10)
>consensus
GAAAAGAUGAUA_CGGGUCCUUGCCUAUGAACGUGUACACACAACUGCUAAAUUCAUUCAGUGCUGCAAUGUGCAGCGGUGUAUAUCCAUAGUUGUCUGCCUGUAA
.............(((((...(..(((((...((((((((...((((...........))))(((((.....))))).)))))))).)))))..)...)))))... (-19.06 = -20.23 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006