Locus 5796

Sequence ID 3L_DroMel_CAF1
Location 15,679,140 – 15,679,230
Length 90
Max. P 0.997208
window9206

overview

Window 6

Location 15,679,140 – 15,679,230
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 96.22
Mean single sequence MFE -25.14
Consensus MFE -23.76
Energy contribution -24.36
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.95
SVM decision value 2.82
SVM RNA-class probability 0.997208
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15679140 90 + 23771897
CACACAGAAACUGAAACACCGACCGACUCCGGAGAUCCGAGAAUUUUCCGGAGCUCAUCUUUUUAUCAGGCAGCCAGCUUGAUAAGCUGC
....(((.................(((((((((((.........))))))))).)).....((((((((((.....))))))))))))). ( -27.70)
>DroSec_CAF1 38675 90 + 1
CACACAGAAACUGAACCACCGAGCGACUCCGGAGAUCCGAGAAUUUUCCGGAGCUCAUCUUUUUAUCAGGCAGCCAGCUUGAUAAGCUGC
....(((...)))........((((((((((((((.........))))))))).))......(((((((((.....)))))))))))).. ( -29.10)
>DroSim_CAF1 38763 90 + 1
CACACAGAAACUGAAACACCGACCGACUCCGGAGAUCCGAGAAUUUUCCGGAGCUCAUCUUUUUAUCAGGCAGCCAGCUUGAUAAGCUGC
....(((.................(((((((((((.........))))))))).)).....((((((((((.....))))))))))))). ( -27.70)
>DroEre_CAF1 38039 90 + 1
CACACAGAAACCGAAACACCGACCGACUCCCGAGAUCCGAGAGUUUUCCGGAGCUCAUCUUUUUAUCAGCCAGCGCGCUUGAUAAGCUGC
....(((...........(((...(((((.((.....)).)))))...)))..........(((((((((......)).)))))))))). ( -18.20)
>DroYak_CAF1 39239 90 + 1
CACACAGAAACUGAAACACCGACCGACUCCGGAGAUCCGAGAAUUUUCCGGAGCUCAUCUUUUUAUCAGCCAGCCAGCUUGAUAAGCUGC
....(((.................(((((((((((.........))))))))).)).....(((((((((......)).)))))))))). ( -23.00)
>consensus
CACACAGAAACUGAAACACCGACCGACUCCGGAGAUCCGAGAAUUUUCCGGAGCUCAUCUUUUUAUCAGGCAGCCAGCUUGAUAAGCUGC
....(((.................(((((((((((.........))))))))).)).....((((((((((.....))))))))))))). (-23.76 = -24.36 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:07 2006