Locus 5795

Sequence ID 3L_DroMel_CAF1
Location 15,678,938 – 15,679,048
Length 110
Max. P 0.511089
window9205

overview

Window 5

Location 15,678,938 – 15,679,048
Length 110
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 86.43
Mean single sequence MFE -32.35
Consensus MFE -23.24
Energy contribution -23.37
Covariance contribution 0.13
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.511089
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15678938 110 - 23771897
GUCCAGCGCCUUUAUCAAUUUUACGACUUCCUUUCCAGUCGAAGUCUGGCCAGAAACAUAUACGUGUAUGUACAUAUAUAUGUAUGUGGAGCGACGGGAAGGACCACCGG
.......................((...((((((((.((((...(((....)))..((((((((((((((....))))))))))))))...))))))))))))....)). ( -32.70)
>DroSec_CAF1 38477 106 - 1
GUCCAGCGCCUUUAUCAAUUUUACGACUUCCUUUCCCGUCGAAGUCUGGCCAGAAACAUAUACGUGUGUGUACAU----AUGUAUGUGGAGCGAGGAGAAGGACCACCGG
((((..(.((((..((........((((((..........))))))..........((((((((((((....)))----)))))))))))..)))).)..))))...... ( -32.50)
>DroSim_CAF1 38565 106 - 1
GUCCAGCGCCUUUAUCAAUUUUACGACUUCCUUUCCCGUCGAAGUCUGGCCAGAAACAUAUACGUGUAUGUACAU----AUGUAUGUGGAGCGAGGAGAAGGACCACCGG
((((..(.((((..((........((((((..........))))))..........(((((((((((......))----)))))))))))..)))).)..))))...... ( -29.00)
>DroEre_CAF1 37847 102 - 1
GUCCAGCGCCUUUAUCAAUUUUACGACUUCCUCCUCGCUCGAAGUCUGGCCAGAUACCAAUACGU--------ACUUAUAUGUAUAGGGAGCGAGGCGGAGGACCACCGG
((((..........((........))..(((.((((((((...((((....)))).((.((((((--------(....))))))).)))))))))).)))))))...... ( -35.20)
>consensus
GUCCAGCGCCUUUAUCAAUUUUACGACUUCCUUUCCCGUCGAAGUCUGGCCAGAAACAUAUACGUGUAUGUACAU____AUGUAUGUGGAGCGAGGAGAAGGACCACCGG
((((..(.((((..((........((((((..........))))))..........(((((((((..............)))))))))))..)))).)..))))...... (-23.24 = -23.37 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:06 2006