Locus 5794

Sequence ID 3L_DroMel_CAF1
Location 15,677,587 – 15,677,694
Length 107
Max. P 0.513748
window9204

overview

Window 4

Location 15,677,587 – 15,677,694
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 94.02
Mean single sequence MFE -29.22
Consensus MFE -22.10
Energy contribution -23.42
Covariance contribution 1.32
Combinations/Pair 1.08
Mean z-score -1.76
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.513748
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15677587 107 - 23771897
CAGGUAGGAUUCUAGUGAAACCUAUCCAACUCCCAUCUACGCUGUGUGUGCGAGCGGAUUCCAGGAAUAAAUUGAAAACCAUAAUUAUGCUCACGCUUACAGCCUUC
..((((((.(((....))).))))))..............((((((.(((.(((((.......((.............)).......))))).))).)))))).... ( -28.76)
>DroSec_CAF1 37108 107 - 1
CAGGUAGGAUUCUAGGGAAACCUAUGCAACUACCAUCCACGCUGUGUGUGCGAGCGGAUUCCAGGAAUAAAUUGAAAACCAUAAUUAUGCUCACGCUUACAGCCUUC
..(((((.....((((....)))).....)))))......((((((.(((.(((((.......((.............)).......))))).))).)))))).... ( -34.76)
>DroSim_CAF1 37194 107 - 1
CAGGUAGGAUUCUAGGGAAACCUAUGCAACUCCCAUCCACGCUGUGUGUGCGAGCGGAUUCCAGGAAUAAAUUGAAAACCAUAAUUAUGCUCACGCUUACAGCCUUC
..((..((((((((((....)))).).)).)))...))..((((((.(((.(((((.......((.............)).......))))).))).)))))).... ( -30.46)
>DroEre_CAF1 36495 106 - 1
CAGGU-GGGUUCUAGGGAAACCUAUGCAACUCCUAAGCACGCUGCGUGUGCGAUAGGAUUCCAGGAAUAAAUUGAAAACCAUAAUUAUGCUCACGCUUACAGCCCUC
.....-(((((.((((....)))).(((..(((((.((((((...))))))..))))).....((.............)).......)))..........))))).. ( -28.52)
>DroYak_CAF1 37638 107 - 1
CAGGUUAGAUUCUAGGGAAACCUAUGCAACUCCCAUCCACGCUGUGUGUGCGAUUGGAUUCCAGGAAUAAAUUGAAAACCAUAAUUAUGCUCACGCUUACAGCCUUC
.(((((..((((((((....))).......(((.((((((((...))))).))).))).....)))))....................((....))....))))).. ( -23.60)
>consensus
CAGGUAGGAUUCUAGGGAAACCUAUGCAACUCCCAUCCACGCUGUGUGUGCGAGCGGAUUCCAGGAAUAAAUUGAAAACCAUAAUUAUGCUCACGCUUACAGCCUUC
..((.((.....((((....)))).....)).))......((((((.(((.(((((.......((.............)).......))))).))).)))))).... (-22.10 = -23.42 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:05 2006