| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,676,826 – 15,676,935 |
| Length | 109 |
| Max. P | 0.634167 |
| Location | 15,676,826 – 15,676,935 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.19 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -15.86 |
| Energy contribution | -16.12 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15676826 109 + 23771897 UUUACCACUCCCCAUAGUUUUCAGUCACGAACUAGUCAUAAAAUUAGCGCAGAGGCCUUCGAGCCAC----------CUCCUCCUGGCAUCUCCAAGGACUGCGAAACUCAAU-UUACUU ...............(((((((((((..(..(((((......)))))..)(((.(((...(((....----------...)))..))).))).....))))).))))))....-...... ( -20.80) >DroSec_CAF1 36339 109 + 1 UUUACCCCCUCCCAUAGUUUCCAGUCACGAACUAGUCAUAAAAUUAGCGCAGAGGCCUUCGAGCCAC----------CUCCUCCUGGCAUCUCCAAGGACUGCGAAACUCAAU-UUACUU ...............(((((((((((..(..(((((......)))))..)(((.(((...(((....----------...)))..))).))).....))))).))))))....-...... ( -23.70) >DroSim_CAF1 36434 109 + 1 UUUAUCACUCCCCAUAGUUUCCAGUCACGAACUAGUCAUAAAAUUAGCACAGAGGCCUUCAAGCCAC----------CUCCUUCUGGCAUCUCCAAGGACUGCGAAACUCAAU-UUACUU ...............(((((((((((..((.....)).........((.(((((((......)))..----------.....)))))).........))))).))))))....-...... ( -21.41) >DroEre_CAF1 35718 119 + 1 UUUACCGCUCCCCAUAGUUUCCAGUCACGAACUAGUCAUAAAAUUAGCGCAGAGGCCUUCGAGCCUCGAGGAGGAGGUGCCUCCUGGCCUCUCCAAGGACUGCGAAACUCAAU-UUACUU ...............(((((((((((..(..(((((......)))))..)(((((((((((.....)))).(((((....)))))))))))).....))))).))))))....-...... ( -39.20) >DroYak_CAF1 36863 109 + 1 UUCACCGCUCCCCAUAGUUUCCAGUCACGAACUAGUCGUAAAAUUAGCGCAGAGGCCUUCGAGCCAC----------CUCCUCCUGGCAUCUCCAAGGACUGUGAAACUCAAU-UUACUU ...............(((((((((((((((.....)))).........(.(((.(((...(((....----------...)))..))).))).)...))))).))))))....-...... ( -24.60) >DroAna_CAF1 94069 87 + 1 ---------GACCAUAGUUUCCAGUCACGAACUAGUCAUAAAAUUAGCGUAAAGGCCUUCAAUGC----------------------C--GUCGAAGGACUGGCAAACAGAAUAUUACUU ---------.......((((((((((.(((.(((((......)))))......(((.......))----------------------)--.)))...)))))).))))............ ( -20.30) >consensus UUUACCACUCCCCAUAGUUUCCAGUCACGAACUAGUCAUAAAAUUAGCGCAGAGGCCUUCGAGCCAC__________CUCCUCCUGGCAUCUCCAAGGACUGCGAAACUCAAU_UUACUU ................((((((((((..(..(((((......)))))..)...(((......)))................................))))).)))))............ (-15.86 = -16.12 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:04 2006