| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,675,710 – 15,675,810 |
| Length | 100 |
| Max. P | 0.604826 |
| Location | 15,675,710 – 15,675,810 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.67 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -14.62 |
| Energy contribution | -15.77 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15675710 100 + 23771897 UGUGGGACAAGAUACAAAUUUGUCCGACUAAUAAGGAAGUUGUUGUUG---CUCAACUGC--------------UUUUUUACGAUAUGUAGCCCCUGGGAGUUCCCCAUGGCAACAU--- .((.(((((((.......))))))).))...(((((((((.((((...---..)))).))--------------)))))))....((((.(((..((((.....)))).))).))))--- ( -32.50) >DroSec_CAF1 35244 102 + 1 UGUGGGACAAGAUACAAAUUUGUCCGACUAAUAAGGAAGUUGUUGU-G---UUCAACUGC--------------UUUUUUACUAUAUUCAGCCUCUGGGAAUUCCCCAUGGCAACAGAUG .((.(((((((.......))))))).))...(((((((((.((((.-.---..)))).))--------------))))))).........(((..((((.....)))).)))........ ( -30.90) >DroSim_CAF1 35316 102 + 1 UGUGGGACAAGAUACAAAUUUGUCCGACUAAUAAGGAAGUUGUUGU-G---UUCAACUGC--------------UUUUUUACUAUAUUCAGCCCCUGGGAAUUCCCCAUGGCAACAGAUG .((.(((((((.......))))))).))...(((((((((.((((.-.---..)))).))--------------))))))).........(((..((((.....)))).)))........ ( -30.40) >DroEre_CAF1 34599 83 + 1 UGCGGGACAAGAUACAAAUUUGUCCGACUAAUAAGGAAGUUGUUGU-G---CCCAACUGC--------------UUUUUUACG-----------------AUUUACCAUGGCAACAGA-- (((.(((((((.......)))))))......(((((((((.((((.-.---..)))).))--------------)))))))..-----------------..........))).....-- ( -19.90) >DroYak_CAF1 35753 100 + 1 UGUGGGACAAGAUACAAAUUUGUCCGACUAAUAAGGAAGUUGUUGU-G---CUCAACUAC--------------UUUUUUAUGACACGAAGCCCCUAGGAAUUUAGCAUGGCAACAGA-- .((((((((((.......))))))).....((((((((((.((((.-.---..)))).))--------------))))))))..)))...(((.((((....))))...)))......-- ( -26.00) >DroAna_CAF1 93020 117 + 1 UGUAGGACAAGCAGCAAAUUUGUUCACUUAAUAAGGAAGUUGUUGU-GCAGCUCGACUGCCUGUUUUUUUUUUGUUUUUUAUGGAAUGCAGCCCCAGGGAGUUCCCCAUGGCAACGGA-- ....(((((((.......))))))).............(((((..(-(.(((((..(((.((((.....(((..(.....)..))).))))...))).)))))...))..)))))...-- ( -26.40) >consensus UGUGGGACAAGAUACAAAUUUGUCCGACUAAUAAGGAAGUUGUUGU_G___CUCAACUGC______________UUUUUUACGAUAUGCAGCCCCUGGGAAUUCCCCAUGGCAACAGA__ .((.(((((((.......))))))).))..........(((((((........)))).................................(((...(((....)))...))))))..... (-14.62 = -15.77 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:03 2006