Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,675,006 – 15,675,110 |
Length | 104 |
Max. P | 0.723884 |
Location | 15,675,006 – 15,675,110 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -34.82 |
Consensus MFE | -15.77 |
Energy contribution | -16.05 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.14 |
Structure conservation index | 0.45 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15675006 104 - 23771897 AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCCAUUCCAGUUGGUGACAAUGGCGGUGUGAAAAUCGCCGAGGGGUGGUGU-----CCGGGGUGGCACUGUCGAACAA ..........((.(((..((...(.(((((((((......((((....))))((((((......))))))..))))))))).-----)..))..))).))......... ( -39.60) >DroSec_CAF1 34544 99 - 1 AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCC-----AGUUGGUGACAAUGGCGGUGUGAAAAUCGCCCAGGGGUGGUGU-----CCGGGGUGGCACUGUCGAACAA ..........((.(((..((...(.(((((((((-----.((((....))))((((((......))))))..))))))))).-----)..))..))).))......... ( -38.70) >DroSim_CAF1 34617 99 - 1 AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCC-----AUUUGGUGACAAUGCCGGUGUGAAAAUCGCCGAGAGGUGGUGU-----CCGGGGUGGCACUGUCGAACAA ................((.(((((((((((....-----...)))))))..(((((.(.((...((((((....))))))..-----.)).).)))))..)))).)).. ( -36.50) >DroEre_CAF1 33920 84 - 1 AAACAUAAAAGGCGCCGU--------------CC-----AGUUGGUGACAAUGGCGGUGUGAAAAUCGGCGAGGGGUGC------UGCUUGGCUGCGACUGUCGAACAA ...........((((((.--------------((-----(.(((....)))))))))))).....(((((.((..((((------(....))).))..))))))).... ( -29.20) >DroYak_CAF1 35057 90 - 1 AAACAUUAAAAGCGCCGU--------------CC-----AGUUGGUGACAAUGGCGGUGUAAAAAUCGGCGAGGGGUGGUGCUGGUGCUUGGCUGGGACUGUCGAACAA ..........((((((..--------------((-----.((((....))))(.((((......)))).)...))..))))))..((.(((((.......))))).)). ( -30.10) >consensus AAACAUUAAAAGCGCCGUCUGACGUCGCCAUUCC_____AGUUGGUGACAAUGGCGGUGUGAAAAUCGCCGAGGGGUGGUGU_____CCGGGGUGGCACUGUCGAACAA ...........((((((((.....................((((....))))))))))))......((((..((.............))..)))).............. (-15.77 = -16.05 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:02 2006