| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,672,926 – 15,673,035 |
| Length | 109 |
| Max. P | 0.719805 |
| Location | 15,672,926 – 15,673,035 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.31 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -18.72 |
| Energy contribution | -22.30 |
| Covariance contribution | 3.58 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15672926 109 - 23771897 AAAAAGCUGAAGCGCAUUGCAAAUUGGUUUAGUUAUUGGCUUAAUUGAAUUGUUGCAGAUUGGACUUUAAAUAAGCGCGACCCAGUCUUCGCUUCAGUUUUGAGCGAAA----------- ..((((((((((((...(((((...((((((((((......)))))))))).)))))((((((..................))))))..))))))))))))........----------- ( -33.27) >DroGri_CAF1 110640 105 - 1 AAAAAGCUUCAGCGCAUUACAAAUUGGUUUUGUUAUUGGCUUAAUUGAAUUGUUGCAGAUUGGACUUUAAAUACGCGA--CU--------GCCUCAUU-----GCGACGACACCAGCAAC .....(((..(((.((..(((((.....)))))...)))))........(((((((((...((.(.............--..--------)))...))-----)))))))....)))... ( -18.96) >DroSim_CAF1 32628 109 - 1 AAAAAGCUGAAGCGCAUUACAAAUUGGUUUAGUUAUUGGCUUAAUUGAAUUGUUGCAGAUUGGACUUUAAAUAAGCGCGACCCAGUCUUCGCUUCAGUUUUGAGCGAAA----------- ..((((((((((((((..((((.(..(((.(((.....))).)))..).)))))))(((((((..................)))))))..)))))))))))........----------- ( -32.17) >DroEre_CAF1 31825 109 - 1 AAAAAGCUGAAGCGCAUUACAAAUUGGUUUAGUUAUUGGCUUAAUUGAAUUGUUGCAGAUUGGACUUUAAAUAAGCGAGACCCAGUCUUGGCUUCAGUUUUGAGCGAAA----------- ..((((((((((((((..((((.(..(((.(((.....))).)))..).)))))))(((((((.(((.........)))..)))))))..)))))))))))........----------- ( -32.40) >DroYak_CAF1 32913 109 - 1 AAAAAGCUGAAGCGCAUUACAAAUUAGUUUAGUUAUUGGCUUAAUUGAAUUGUUGCAGAUUGGACUUUAAAUAAGCGAGACCCAGUCUUCGCUUCAGUUUUGAGCGAAA----------- ..((((((((((((((..((((.((((((.(((.....))).)))))).)))))))(((((((.(((.........)))..)))))))..)))))))))))........----------- ( -32.70) >DroAna_CAF1 90202 99 - 1 ----------ACUGCAUUACAAAUUGGCUUAGUUAUUGGCUUAAUUGAAUUGUUGCAGAUUGGACUUUAAAUAAGCGCAAGCCAGUCUUCGUUUCUAGUUUGAGUAAAA----------- ----------.(((((.....((((((((........))).))))).......))))).(..((((..((((..((....))..(....)))))..))))..)......----------- ( -19.30) >consensus AAAAAGCUGAAGCGCAUUACAAAUUGGUUUAGUUAUUGGCUUAAUUGAAUUGUUGCAGAUUGGACUUUAAAUAAGCGAGACCCAGUCUUCGCUUCAGUUUUGAGCGAAA___________ ..((((((((((((((..((((.(..(((.(((.....))).)))..).)))))))(((((((..................)))))))..)))))))))))................... (-18.72 = -22.30 + 3.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:59 2006