Locus 5788

Sequence ID 3L_DroMel_CAF1
Location 15,671,828 – 15,671,937
Length 109
Max. P 0.760086
window9197

overview

Window 7

Location 15,671,828 – 15,671,937
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 97.07
Mean single sequence MFE -28.24
Consensus MFE -24.96
Energy contribution -25.16
Covariance contribution 0.20
Combinations/Pair 1.06
Mean z-score -1.43
Structure conservation index 0.88
SVM decision value 0.50
SVM RNA-class probability 0.760086
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15671828 109 - 23771897
AAUGUCAGCACGGAA-AAAAUUGGACUACGAACUCUUUUUUCAGGCCUGAUUGACAAGAAAAUCAGUGAGGCAGGGAAAUGUUUUUGUUUCUUUUUCGGUGACACUCGAA
..(((((.(.(((((-((....((((...((((....(((((..((((.(((((........))))).))))..))))).))))..)))).)))))))))))))...... ( -29.20)
>DroSec_CAF1 31417 108 - 1
AAUGUCAGCACGGAA-AAAAUUGGACUUCGAACUCUUUUUUCAGGCCUGAUUGACAAGAAAAUCAGUG-GGCAGGGAAAUGUUAUUGUUUCUUUUUCGGUGACACUCGAA
..(((((.(.(((((-((....((((....(((....(((((..((((.(((((........))))))-)))..))))).)))...)))).)))))))))))))...... ( -25.40)
>DroSim_CAF1 31506 109 - 1
AAUGUCAGCACGGAA-AAAAUUGGACUACGAACUCUUUUUUCAGGCCUGAUUGACAAGAAAAUCAGUGAGGCAGGGAAAUGUUUUUGUUUCUUUUUCGGUGACACUCGAA
..(((((.(.(((((-((....((((...((((....(((((..((((.(((((........))))).))))..))))).))))..)))).)))))))))))))...... ( -29.20)
>DroEre_CAF1 30784 108 - 1
AAUGUCAGCACGGAA-AAAAUUGGGCUUCGAACUCUUUUUUCAGGCCUGAUUGACAAGAAAAUCAGUGAGGCAGGGAAAUGUUUUUGUUUCUU-UUCGGUGACACUCGAA
..(((((.(.(((((-(.(((..(((((.(((.......))))))))..)))...............((((((((((....))))))))))))-))))))))))...... ( -28.00)
>DroYak_CAF1 31801 110 - 1
AAUGUCAGCACGAAAAAAAAUUGGGCUUCGAACUCUUUUUUCAGGCCUGAUUGACAAGAAAAUCAGUGAGGCAGGGAAAUGUUUUUGUUUCUUUUUCGGUGACACUCGAA
..(((((.(.(((((((.(((..(((((.(((.......))))))))..)))...............((((((((((....)))))))))))))))))))))))...... ( -29.40)
>consensus
AAUGUCAGCACGGAA_AAAAUUGGACUUCGAACUCUUUUUUCAGGCCUGAUUGACAAGAAAAUCAGUGAGGCAGGGAAAUGUUUUUGUUUCUUUUUCGGUGACACUCGAA
..(((((.(.(((((.......((((...((((....(((((..((((.(((((........))))).))))..))))).))))..))))...)))))))))))...... (-24.96 = -25.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:58 2006