Locus 5787

Sequence ID 3L_DroMel_CAF1
Location 15,671,568 – 15,671,678
Length 110
Max. P 0.922750
window9196

overview

Window 6

Location 15,671,568 – 15,671,678
Length 110
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 67.30
Mean single sequence MFE -16.54
Consensus MFE -4.34
Energy contribution -4.34
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.26
SVM decision value 1.15
SVM RNA-class probability 0.922750
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15671568 110 - 23771897
AUAAAUGAAAACCCAACGACACCCAGCGGACAACAAUCAAUAACAUUUGUAAUGUCAAUAAUGACAAGG--------CCUCCAAAACUAUAGGUAACCC-UAGUACAACUGGAGGUACA
(((((((.........((........))((......)).....)))))))..(((((....)))))..(--------((((((......((((....))-)).......)))))))... ( -22.22)
>DroSec_CAF1 31174 92 - 1
AUAAAUGAAAACCCAAAGACA---------CAACAAUCAAUAACAUUUGUAAUGUCAAUAAUGACAAUG--------CCCCCAAAACUGGAGGUAACCC-UACUACAA---------CA
.....................---------................(((((.(((((....))))).((--------((.(((....))).))))....-...)))))---------.. ( -14.00)
>DroSim_CAF1 31263 92 - 1
AUAAAUGAAAACCCAAAGACA---------CAACAAUCAAUAACAUUUGUAAUGUCAAUAAUGACAAGG--------CCCCCAAAACUGGAGGUAACCC-UACUACAA---------CA
.....................---------................(((((.(((((....)))))..(--------((.(((....))).))).....-...)))))---------.. ( -13.00)
>DroEre_CAF1 30566 94 - 1
AGAUAUAAAACC-CAACG--------------ACAAUCAAUAACAUUUGUAAUGUCAAUAAUGACAAGG--------CCCACAAAGCUG--GGCAACCCAUAUUGUAUCUCGAGGCACA
((((((((....-....(--------------(((..(((......)))...))))....(((.....(--------((((......))--)))....))).))))))))......... ( -19.70)
>DroAna_CAF1 89034 110 - 1
-------AGAGCCGAAGGUGCCCCAGCGGACAACAAUCAAUAACAUUUGUAAUGUCAAUAAUGACAAGAGUUACAAGCCCCAAAAGAAAUGAAUAAAUG-GAAAGAAACUGAAA-GACA
-------...((((..((....))..))).).....(((......((((((((((((....)))))....)))))))..(((...............))-)........)))..-.... ( -13.76)
>consensus
AUAAAUGAAAACCCAAAGACA_________CAACAAUCAAUAACAUUUGUAAUGUCAAUAAUGACAAGG________CCCCCAAAACUGGAGGUAACCC_UACUACAACU__A___ACA
................................((((..........))))..(((((....)))))..................................................... ( -4.34 =  -4.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:57 2006