Locus 5786

Sequence ID 3L_DroMel_CAF1
Location 15,670,486 – 15,670,586
Length 100
Max. P 0.642954
window9195

overview

Window 5

Location 15,670,486 – 15,670,586
Length 100
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 86.13
Mean single sequence MFE -22.52
Consensus MFE -18.00
Energy contribution -17.28
Covariance contribution -0.72
Combinations/Pair 1.24
Mean z-score -1.59
Structure conservation index 0.80
SVM decision value 0.23
SVM RNA-class probability 0.642954
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15670486 100 + 23771897
UCAAAAUCGAGUGUGCAAAUAAAAUCCGCCCAUAAACCGGGUAACUGGAACGGUUUUGCAAGCAGUUUAAUAUACCUUUAUUGAUUCAUUUGAC------UCGUAA
.......(((((.((((((.....(((((((.......))))....))).....))))))......((((((......))))))........))------)))... ( -20.40)
>DroSec_CAF1 30108 98 + 1
UCAAAAUCGAGUGUGCAAAUAAAAUCCGCCCAUAAACCGGGUAACUGGAACUGUUUUGCAAGCAGUUUAAUAUACCUUUAUUGAUUCAUUUGAC--------GUAA
......(((((((....((((((....((((.......)))).....((((((((.....))))))))........))))))....))))))).--------.... ( -21.40)
>DroSim_CAF1 30193 100 + 1
UCAAAAUCGAGUGUGCAAAAAAAAUCCGCCCAUAAGCCGGGUAACUGGAACUGUUUUGCAAGCAUUUUAAUAUACCUUUAUUGAUUCAUUUGAC------UCGUAA
.......(((((.(((((((....(((((((.......))))....)))....)))))))......((((((......))))))........))------)))... ( -21.90)
>DroEre_CAF1 29551 100 + 1
-----AUCGAGCGUGCAAAUGAAAUCCGCCUGUAAAACGGGUAACUGGAACGGAUUUGCAAGCAGU-UGAUAUACCUUUAUUGAUUUAUUCGAUUUAUCAUCGCAA
-----(((((((.(((((((....((((((((.....)))))....)))....))))))).))(((-..(((......)))..)))...)))))............ ( -24.90)
>DroYak_CAF1 30463 100 + 1
UCAAAAUCGAAUGAGCAAAUAAAAUCCGCCUAUAAGCCGGGUAACUGGAACGGUUUUGCAAGCAAUGCGAUAUACCUUUAUUGAUUCAUUUGAC------UCGUAA
......(((((((((..((((((.............((((....))))...(((.(((((.....)))))...)))))))))..))))))))).------...... ( -24.00)
>consensus
UCAAAAUCGAGUGUGCAAAUAAAAUCCGCCCAUAAACCGGGUAACUGGAACGGUUUUGCAAGCAGUUUAAUAUACCUUUAUUGAUUCAUUUGAC______UCGUAA
......(((((((((((((.....(((((((.......))))....))).....)))))).......(((((......)))))...)))))))............. (-18.00 = -17.28 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:56 2006