Locus 5783

Sequence ID 3L_DroMel_CAF1
Location 15,664,445 – 15,664,605
Length 160
Max. P 0.999458
window9187 window9188

overview

Window 7

Location 15,664,445 – 15,664,565
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.78
Mean single sequence MFE -32.75
Consensus MFE -30.51
Energy contribution -30.74
Covariance contribution 0.22
Combinations/Pair 1.06
Mean z-score -1.40
Structure conservation index 0.93
SVM decision value 1.40
SVM RNA-class probability 0.950739
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15664445 120 - 23771897
ACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAUCAGUUCCGCACCUGGAAACGCAAUUGUAAGUAUUCCGCAU
.(((((((.(((((((.............))))))).)))))))..((....(((((..(((...(((...(((......)))....)))...(....))))..))).))....)).... ( -34.02)
>DroSec_CAF1 24238 120 - 1
ACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAUCAGUUCCGCACCUGGAAACGCAAUUGUAAGUAUUCCGCAU
.(((((((.(((((((.............))))))).)))))))..((....(((((..(((...(((...(((......)))....)))...(....))))..))).))....)).... ( -34.02)
>DroSim_CAF1 24218 120 - 1
ACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAUCAGUUCCGCACCUGGAAACGCAAUUGUAAGUAUUCCGCAU
.(((((((.(((((((.............))))))).)))))))..((....(((((..(((...(((...(((......)))....)))...(....))))..))).))....)).... ( -34.02)
>DroEre_CAF1 23982 115 - 1
ACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAUCAGUUCCGCACCUGGAAGCGCAAUUGUAAGUAUUC-----
.(((((((.(((((((.............))))))).))))))).........((((..(((....((((((.....................)))))))))..)))).......----- ( -33.62)
>DroYak_CAF1 24331 120 - 1
ACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAUCAGUUCCGCACCUGGAAACGCAAUUGUAAGUAUUCCGCAU
.(((((((.(((((((.............))))))).)))))))..((....(((((..(((...(((...(((......)))....)))...(....))))..))).))....)).... ( -34.02)
>DroAna_CAF1 82946 120 - 1
ACGAGGUCUGGAUUGGAAUCGUCUUCACCCUGAUCCUCAUCUCUAUGGUGUUCUGCAUCUGCUCCUGCUUCCUGUACCACCAGUUCCGCACCUGGAAGCGCAAUUGUAAGUAUUUCGUCU
(((((((((((((..(.............)..)))).((((.....))))...((((..(((....((((((.....................)))))))))..)))))).))))))).. ( -26.82)
>consensus
ACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAUCAGUUCCGCACCUGGAAACGCAAUUGUAAGUAUUCCGCAU
.(((((((.(((((((.............))))))).)))))))..((....(((((..(((((((((...(((......)))....)))...)))...)))..))).))....)).... (-30.51 = -30.74 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 15,664,485 – 15,664,605
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.56
Mean single sequence MFE -40.54
Consensus MFE -38.36
Energy contribution -38.55
Covariance contribution 0.19
Combinations/Pair 1.03
Mean z-score -2.23
Structure conservation index 0.95
SVM decision value 3.62
SVM RNA-class probability 0.999458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15664485 120 - 23771897
GAUCAGCUGCAGCAGCAGUUGGAGUACGAUAAAUUCAUGAACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAU
...(((..((((.(((((.((.((.((((.....)).....(((((((.(((((((.............))))))).)))))))...))...)).)).))))).))))...)))...... ( -40.62)
>DroSec_CAF1 24278 120 - 1
GAUCAGCUGCAGCAGCAGUUGGAGUACGAUAAAUUCAUGAACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAU
...(((..((((.(((((.((.((.((((.....)).....(((((((.(((((((.............))))))).)))))))...))...)).)).))))).))))...)))...... ( -40.62)
>DroSim_CAF1 24258 120 - 1
GAUCAGCUGCAGCAGCAGUUGGAGUACGAUAAAUUCAUGAACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAU
...(((..((((.(((((.((.((.((((.....)).....(((((((.(((((((.............))))))).)))))))...))...)).)).))))).))))...)))...... ( -40.62)
>DroEre_CAF1 24017 120 - 1
GAUCAGCUGCAGCAGCAGUUGGAGUACGACAAGUUCAUGAACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAU
...(((..((((.(((((.((.((...(((..(((....)))((((((.(((((((.............))))))).))))))....)))..)).)).))))).))))...)))...... ( -42.82)
>DroYak_CAF1 24371 120 - 1
GAUCAGCUGCAGCAGCAGUUGGAGUACGAUAAGUUCAUGAACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAU
...(((..((((.(((((.((.((...(((..(((....)))((((((.(((((((.............))))))).))))))....)))..)).)).))))).))))...)))...... ( -40.92)
>DroAna_CAF1 82986 120 - 1
GACCAGCAGCAGCAGCAGCUGGAGUACGACAAGUUCAUGAACGAGGUCUGGAUUGGAAUCGUCUUCACCCUGAUCCUCAUCUCUAUGGUGUUCUGCAUCUGCUCCUGCUUCCUGUACCAC
...(((.(((((.(((((.((.((.(((.((.(((....)))(((((..((((..(.............)..))))..)))))..)).))).)).)).))))).)))))..)))...... ( -37.62)
>consensus
GAUCAGCUGCAGCAGCAGUUGGAGUACGAUAAAUUCAUGAACGAGGUGUGGAUCGGCAUCGUCUUCACCCUGAUCCUCAUCUCGAUGGUCUUCUGCAUCUGCUCCUGCUUCCUGUACCAU
...(((..((((.(((((.((.((.((((.....)).....(((((((.(((((((.............))))))).)))))))...))...)).)).))))).))))...)))...... (-38.36 = -38.55 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:50 2006