Locus 5782

Sequence ID 3L_DroMel_CAF1
Location 15,663,913 – 15,664,030
Length 117
Max. P 0.989251
window9186

overview

Window 6

Location 15,663,913 – 15,664,030
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 96.39
Mean single sequence MFE -30.78
Consensus MFE -27.86
Energy contribution -28.06
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.91
SVM decision value 2.16
SVM RNA-class probability 0.989251
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15663913 117 + 23771897
UAAUUGCCUUGGCACCGCUUUCGAAUUAAACUCGAGGUAGACGAAUUUCUCUGAAAUUUUUUGCCGCACUUUUCUGCCAUUUCGUUGGCGAUGUGCUAAUUUUUUUCCAAGGUUUCG
.....(((((((........((((.......))))((((((.(((((((...)))))))))))))((((...((.((((......)))))).))))..........))))))).... ( -33.70)
>DroSec_CAF1 23712 116 + 1
UAAUUGCCUUGGCACCGCUUUCGAAUUAAACUGGAGGUAGACGAAUUUCUCUGAAAUU-UUUGCCGCACUUUUCUGCGAUUUCGUUGGCGAUGUGCUAAUUUGUUCCCAAGGUUUCG
.....(((((((((.((((..((((..........((((((..((((((...))))))-))))))(((......)))...))))..)))).)).((......))..))))))).... ( -29.40)
>DroSim_CAF1 23685 116 + 1
UAAUUGCCUUGGCACCGCUUUCGAAUUAAACUCGAGGUAGACGAAUUUCUCUGAAAUU-UUUGCCGCACUUUUCUGCGAUUUCGUUGGCGAUGUGCUAAUUUGUUCCCAAGGUUUCG
.....(((((((((.((((..((((..........((((((..((((((...))))))-))))))(((......)))...))))..)))).)).((......))..))))))).... ( -29.40)
>DroEre_CAF1 23508 116 + 1
UAAUUGCCUUGGCACCGCUUUCGAAUUAAACACGAGGUAGACGAAUUUCUCUGAAAUG-UUUGCCGCACUUUUCUGCCAUUUCGUUGGCAAUGUGCUAAUUUUUUCCCAAGGUCUCG
.....(((((((.......................(((((((..(((((...))))))-))))))((((.....(((((......)))))..))))..........))))))).... ( -31.30)
>DroYak_CAF1 23814 116 + 1
UAAUUGCCUUGGCACCGCUUUCGAAUUAAACACGAGGUAGACGAAUUUCUCUGAAAUU-UUUGCCGCACUUUUCUGCCAUUUCGUUGGCGAUGUGCUAAUUUUUUCCCAAGGUUUCG
.....(((((((.......................((((((..((((((...))))))-))))))((((...((.((((......)))))).))))..........))))))).... ( -30.10)
>consensus
UAAUUGCCUUGGCACCGCUUUCGAAUUAAACUCGAGGUAGACGAAUUUCUCUGAAAUU_UUUGCCGCACUUUUCUGCCAUUUCGUUGGCGAUGUGCUAAUUUUUUCCCAAGGUUUCG
.....((((((((((((((..((((..........((((((...(((((...)))))..))))))(((......)))...))))..))))..))))...........)))))).... (-27.86 = -28.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:48 2006