Locus 578

Sequence ID 3L_DroMel_CAF1
Location 1,657,389 – 1,657,487
Length 98
Max. P 0.830336
window882

overview

Window 2

Location 1,657,389 – 1,657,487
Length 98
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 67.62
Mean single sequence MFE -26.80
Consensus MFE -8.37
Energy contribution -9.70
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.31
SVM decision value 0.71
SVM RNA-class probability 0.830336
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1657389 98 - 23771897
ACAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC--AACAACGAUCGUUGGCUCGUGCAGAGUUCAAAAUGCACGCAACCUG-------CA---AGACAGGCGACUAUU-
...((........((((.(((((.....)))))..--..((((....))))))))(((((..........)))))))..((((-------..---...))))........- ( -29.10)
>DroSec_CAF1 19563 98 - 1
UCAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC--AACAACGAUCGUUGGCUCGUGCAGAGUUCACAAUGCACGCAACCUG-------CA---AGACAGACGACUAUU-
...((........((((.(((((.....)))))..--..((((....))))))))(((((..(....)..)))))))...(((-------..---...))).........- ( -27.20)
>DroSim_CAF1 19673 98 - 1
UCAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC--AACAACGAUCGUUGGCGCGUGCAGAGUUCACAAUGCACGCAACCUG-------CA---AGACAGGCGACUAUU-
..............(((((((((.....)))))..--..((((....))))..(((((((..(....)..)))))))..((((-------..---...)))).))))...- ( -32.20)
>DroWil_CAF1 24058 90 - 1
ACAAGAAGA----------GGACGCAUU--------UUGGCUUGCUCGCUCGCUCGUGCAAAGUUCAUAAUGCACGCAAAGUGGCGACUUGA---AGACAACAAGGAACUU
.((((..((----------(.(.((...--------...)).).)))((.((((((((((..........))))))...))))))..)))).---................ ( -22.60)
>DroYak_CAF1 19548 98 - 1
ACAACAAUAACCACAGUCUUGUUGAAUUAACCAAC--AACAAUGAUCGUUGGCUCGUGCAGAGUUCACAAUGCACGCAACCUG-------CA---AGACAGCCGACUAUU-
.............((...((((((.......))))--))...))...(((((((.(((((..(....)..)))))((.....)-------).---....)))))))....- ( -24.60)
>DroAna_CAF1 18678 86 - 1
GCAGCAACAAAC----------------AGGCAACACGGGAGUGAUGGUUGGCUCGUGCAGAGUUCAUAAUGCACGCAACCAG-------GCAGUAGACGGGGAACUGU--
...((.......----------------......(((....))).((((((...((((((..........)))))))))))).-------)).....((((....))))-- ( -25.10)
>consensus
ACAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC__AACAACGAUCGUUGGCUCGUGCAGAGUUCACAAUGCACGCAACCUG_______CA___AGACAGGCGACUAUU_
.............................((((((............)))))).((((((..........))))))................................... ( -8.37 =  -9.70 +   1.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:45 2006