Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,657,389 – 1,657,487 |
Length | 98 |
Max. P | 0.830336 |
Location | 1,657,389 – 1,657,487 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 67.62 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -8.37 |
Energy contribution | -9.70 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.31 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1657389 98 - 23771897 ACAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC--AACAACGAUCGUUGGCUCGUGCAGAGUUCAAAAUGCACGCAACCUG-------CA---AGACAGGCGACUAUU- ...((........((((.(((((.....)))))..--..((((....))))))))(((((..........)))))))..((((-------..---...))))........- ( -29.10) >DroSec_CAF1 19563 98 - 1 UCAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC--AACAACGAUCGUUGGCUCGUGCAGAGUUCACAAUGCACGCAACCUG-------CA---AGACAGACGACUAUU- ...((........((((.(((((.....)))))..--..((((....))))))))(((((..(....)..)))))))...(((-------..---...))).........- ( -27.20) >DroSim_CAF1 19673 98 - 1 UCAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC--AACAACGAUCGUUGGCGCGUGCAGAGUUCACAAUGCACGCAACCUG-------CA---AGACAGGCGACUAUU- ..............(((((((((.....)))))..--..((((....))))..(((((((..(....)..)))))))..((((-------..---...)))).))))...- ( -32.20) >DroWil_CAF1 24058 90 - 1 ACAAGAAGA----------GGACGCAUU--------UUGGCUUGCUCGCUCGCUCGUGCAAAGUUCAUAAUGCACGCAAAGUGGCGACUUGA---AGACAACAAGGAACUU .((((..((----------(.(.((...--------...)).).)))((.((((((((((..........))))))...))))))..)))).---................ ( -22.60) >DroYak_CAF1 19548 98 - 1 ACAACAAUAACCACAGUCUUGUUGAAUUAACCAAC--AACAAUGAUCGUUGGCUCGUGCAGAGUUCACAAUGCACGCAACCUG-------CA---AGACAGCCGACUAUU- .............((...((((((.......))))--))...))...(((((((.(((((..(....)..)))))((.....)-------).---....)))))))....- ( -24.60) >DroAna_CAF1 18678 86 - 1 GCAGCAACAAAC----------------AGGCAACACGGGAGUGAUGGUUGGCUCGUGCAGAGUUCAUAAUGCACGCAACCAG-------GCAGUAGACGGGGAACUGU-- ...((.......----------------......(((....))).((((((...((((((..........)))))))))))).-------)).....((((....))))-- ( -25.10) >consensus ACAGCAACAACAAGAGUCUGGCCAAAUCGGCCAAC__AACAACGAUCGUUGGCUCGUGCAGAGUUCACAAUGCACGCAACCUG_______CA___AGACAGGCGACUAUU_ .............................((((((............)))))).((((((..........))))))................................... ( -8.37 = -9.70 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:45 2006