| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,660,701 – 15,660,803 |
| Length | 102 |
| Max. P | 0.726397 |
| Location | 15,660,701 – 15,660,803 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.95 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -10.61 |
| Energy contribution | -11.67 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15660701 102 - 23771897 AACAACAUAAUUAGCUCGAAAUGCAAAUUCGAAUGGGAAUCCGAAUC------------GGAGAGGCAGCGAGAAAGCGCAACUAAAGGGCAAUUUAUUAAAAGCCCAUCCAUC ..............((((...(((...(((((.(.((...)).).))------------)))...))).))))..............((((............))))....... ( -23.20) >DroSec_CAF1 20518 88 - 1 AACAACAUAAUUAGCUCGAAAUGCAAAUUCGAAUGGGAA--------------------------GCAGCGAGAAAACGCAACCAAAGGGCAAUUUAUUAAAAGCCCAUCCAUC ...............(((((.......)))))(((((..--------------------------...(((......))).......((((............)))).))))). ( -16.90) >DroSim_CAF1 20490 88 - 1 AACAACAUAAUUAGCUCGAAAUGCAAAUUCGAAUGGGAA--------------------------GCAGCGAGAAAGCGCAACCAAAGGGCAAUUUAUUAAAAGCCCAUCCAUC ...............(((((.......)))))(((((..--------------------------((.((......)))).......((((............)))).))))). ( -17.60) >DroEre_CAF1 20326 114 - 1 AACAACAUAAUUAGCUCGAGAUGCAAAUUCGAAUGGGAAUCCGAAUCCGAAUCCGAAUCGGAGAGGCAGCGAGAAAGCGCAUCCGAAGGGCAAUUUAUUAAAAGCCCAUCCGUC ...............(((.(((((...(((((.(.(((.((.......)).))).).)))))......((......)))))))))).((((............))))....... ( -28.80) >DroYak_CAF1 20540 96 - 1 AACAACAUAAUUAGCUCGAAAUGCAAAUUCGAAUGGGAAGCUGAAUCCGAAUCCGA------------------AAGCACAACCAAAGGGCAAUUUAUUAAAAGCCCAUCCAUC ...............(((((.......)))))(((((..(((.....((....)).------------------.))).........((((............)))).))))). ( -15.90) >DroAna_CAF1 79449 84 - 1 AACAACAUAAUUAGCUCGGGAUGCAAAUCCCAUCG------------------------------ACAGCGAGAAAGCGCAUCCAAAGGGCAAUUUAUUAAAAAACCAUCCAUU .............((((.((((((...((.....)------------------------------)..((......))))))))...))))....................... ( -18.20) >consensus AACAACAUAAUUAGCUCGAAAUGCAAAUUCGAAUGGGAA__________________________GCAGCGAGAAAGCGCAACCAAAGGGCAAUUUAUUAAAAGCCCAUCCAUC ...............(((((.......)))))(((((...............................(((......))).......((((............)))).))))). (-10.61 = -11.67 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:40 2006