Locus 5775

Sequence ID 3L_DroMel_CAF1
Location 15,655,921 – 15,656,019
Length 98
Max. P 0.973627
window9174

overview

Window 4

Location 15,655,921 – 15,656,019
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.60
Mean single sequence MFE -22.43
Consensus MFE -16.01
Energy contribution -16.43
Covariance contribution 0.42
Combinations/Pair 1.11
Mean z-score -2.27
Structure conservation index 0.71
SVM decision value 1.71
SVM RNA-class probability 0.973627
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15655921 98 - 23771897
GCCAUUAGCAUAGUUUGCCUCAGAUUAUGCUGAUAAGGCACAAAUGAAUUUCUAUUCAGUGCGAGUGAUCGCAACCCUAUCCCAAUGUAUUCCCCAUU
(((((((((((((((((...))))))))))))))..)))(((..(((((....))))).(((((....)))))............))).......... ( -29.70)
>DroSec_CAF1 15667 98 - 1
GCCAUUAGCAUAGUUUGCCUCAGAUUAUGCUGAUAAGGCACAAAUGAAUUUCUAUUCAGUGCGACUGAUCGCAACCCUAUCCCAAUGUAUUCCCCAUU
(((((((((((((((((...))))))))))))))..)))(((..(((((....))))).(((((....)))))............))).......... ( -27.20)
>DroSim_CAF1 15653 98 - 1
GCCAUUAGCAUAGUUUGCCUCAGAUUAUGCUGAUAAGGCACAAAUGAAUUUCUAUUCAGUGCGAGUGAUCGCAACCCUAUCCCAAUGUAUUCCCCAUU
(((((((((((((((((...))))))))))))))..)))(((..(((((....))))).(((((....)))))............))).......... ( -29.70)
>DroEre_CAF1 15863 81 - 1
GCCAUUAGCAUAGUUUGC--CAGAUUAUGAUGAUAAGUCACAAAU---------------GCGAGUGAUCGCAACCCUAUCCCAAUGUAUUCUCCAGG
.((((((.(((((((...--..))))))).))))..........(---------------((((....))))).......................)) ( -14.30)
>DroYak_CAF1 15704 98 - 1
GCCAUUAGCAUAGUUUGCCUCAGAUUAUGCUGAUAAGUCACAAACAAAUUUCUAUUCAGAGCGAGUGAUCGCAACCCUAUCCCAAUGUAUUCCCCAUU
...((((((((((((((...)))))))))))))).........(((....(((....)))((((....)))).............))).......... ( -21.80)
>DroAna_CAF1 75252 80 - 1
UCCAUUAGCAUAGUUUGUGUUAGAUUAAGCAGAUAAGUU-------CAUUUCGAUUUACAAAAAGGGUUUCCA--------CCAAAGG---GCCCUCU
.......((.(((((((...))))))).))...((((((-------......)))))).....(((((..((.--------.....))---))))).. ( -11.90)
>consensus
GCCAUUAGCAUAGUUUGCCUCAGAUUAUGCUGAUAAGGCACAAAUGAAUUUCUAUUCAGUGCGAGUGAUCGCAACCCUAUCCCAAUGUAUUCCCCAUU
...((((((((((((((...))))))))))))))..........................((((....)))).......................... (-16.01 = -16.43 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:36 2006