| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,651,884 – 15,651,999 |
| Length | 115 |
| Max. P | 0.758341 |
| Location | 15,651,884 – 15,651,999 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.23 |
| Mean single sequence MFE | -24.51 |
| Consensus MFE | -11.09 |
| Energy contribution | -10.96 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.758341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15651884 115 + 23771897 AUCAAUAAAUA---AACUCAGUUUUAAA--AACUCACAUCAUUCACUGGAUAAUAUGAAUGAUCCAGAAAAUACUUGUGGUUUUCUAAGGAUUCAUUCAUAGAUGAUCCCAAAUGCAAAU ...........---..............--.........((((....((((..(((((((((((((((((((.......)))))))..))).)))))))))....))))..))))..... ( -21.90) >DroSec_CAF1 11625 115 + 1 AUCAAUGCAUU---AACUCAGUUUUAAA--AACUCACAUCUUUCACUGGAUAGUAUGAAUGAUCCAGAAAAUACUUGUGGUGUUCUAAGGAUUCAUUCAUAGCUGAUCCCAAAUGCAAAU .....((((((---...(((((......--.......((((......))))..((((((((((((..(.(((((.....))))).)..))).)))))))))))))).....))))))... ( -27.30) >DroSim_CAF1 11611 110 + 1 AUCAA-----U---AACUCAGUUUUAAA--AACUCACAUCUUUCACUGGAUAGUAUGAAUGUUCCAAAAAAUACUUGUGGUGUUCUAAGGAUUCAUUCAUAGCUGAUCCCAAAUGCAAAU .....-----.---...(((((......--.......((((......))))..((((((((.(((....(((((.....)))))....)))..))))))))))))).............. ( -20.00) >DroEre_CAF1 11914 115 + 1 -UCAAUAAAUG---AACUCAGUAU-AAAAAAACGCACAUCAGUCACUGGAUAGUACGAAUGAUCCAGAAAAUACGUGUGGUGUUCCAAGGAUUCAUUAAUUAUCGAUCCCAAAUGCAAAU -..........---......((((-.....(((((((((......((((((.((....)).)))))).......)))).)))))....(((((.((.....)).)))))...)))).... ( -18.62) >DroYak_CAF1 11634 114 + 1 AUCAAUAAAUU---AACUCAGCAU-AAA--AACCCACAUCAAUUACUGGAUAGUAAGAACGAUCCAGAAAAUACUUGUGGUGUUCUAGGGAUUGAUUAAAUGUUGAUCCCAAAUGCAAGU ...........---......((((-...--((((((((.......((((((.((....)).))))))........))))).)))...(((((..((.....))..)))))..)))).... ( -31.66) >DroPer_CAF1 56642 114 + 1 ---AAUAAAUAAAGAAC-CAAUUUUUGC--AACUUGCAUCAGUAACCGGGUAGUAGGAACGCUCCAGAAAGUAUCUGUGGAGCUCAAUGGAGCUGUUCAUCUGGCCACCCAAGUGUAUGU ---..............-..(((..(((--.....)))..)))....((((.((..((((((((((...(((.((....)))))...)))))).)))).....)).)))).......... ( -27.60) >consensus AUCAAUAAAUU___AACUCAGUUUUAAA__AACUCACAUCAUUCACUGGAUAGUAUGAAUGAUCCAGAAAAUACUUGUGGUGUUCUAAGGAUUCAUUCAUAGCUGAUCCCAAAUGCAAAU ..................................((((.......((((((.((....)).))))))........))))(((((....(((((...........)))))..))))).... (-11.09 = -10.96 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:33 2006