Locus 5771

Sequence ID 3L_DroMel_CAF1
Location 15,647,270 – 15,647,390
Length 120
Max. P 0.963267
window9167 window9168

overview

Window 7

Location 15,647,270 – 15,647,390
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.50
Mean single sequence MFE -36.97
Consensus MFE -19.05
Energy contribution -21.00
Covariance contribution 1.95
Combinations/Pair 1.20
Mean z-score -2.09
Structure conservation index 0.52
SVM decision value 0.23
SVM RNA-class probability 0.643902
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15647270 120 + 23771897
AAUCCUCCCUUGAUCGAUAAGCAAAAAUGUGGCGCCACAAAGGGCAUUAUUUUACCAAUCGGAUAGUUGGUAAGACCGGCAUGAAGAAAGUGGUUCCUGAUUUGCGGCGCCACUUGGCUU
..................((((...((.((((((((.(((((((.((((((((.((....))...(((((.....)))))......)))))))).)))..)))).)))))))))).)))) ( -38.40)
>DroSec_CAF1 6918 120 + 1
AAACCUCCCUUGAUCGAUAAGCAAAAAUGUGGCGCCACAAAGGGCAUUAUUUUACCUAUCGCAUAGUUGGUAAGACCAGCAUGAAGAAUGUGGUUCCUGAUUUGCGGCGCCACUUGGCUU
..................((((...((.((((((((....(((...........)))...(((.(((..(...(((((.(((.....)))))))).)..)))))))))))))))).)))) ( -36.30)
>DroSim_CAF1 6931 120 + 1
AAUCCUCCCUUGAUCGAUAAGCAAAAAUGUGGCGCCACAAAGGGCAUUAUUUUACCUAUCGCAUAGUUGGUAAGACCAGCAUGAAGAAUGUGGUUCCUAAUUUGCGGCGCCACUUGGCUU
..................((((...((.((((((((....(((...........)))...(((.((((((...(((((.(((.....)))))))).))))))))))))))))))).)))) ( -36.80)
>DroEre_CAF1 7339 120 + 1
AAUCCUGCCUUGAUGGAUAAGCAGAAAUGCGGCGCCACAAAUGGCAUUAUUUUACCUACCCCAUAGCUGGAAAGUGCAGCAUGAAGAUAAUGGUUCCUGAUCUGCGGCGCCACUUGGCUU
......(((..(........(((....)))((((((.((...(((((((((((........(((.((((.......))))))))))))))))...)).....)).)))))).)..))).. ( -36.00)
>DroYak_CAF1 6975 120 + 1
AGUCCUCCCUUGAUGGAUAAGCAAAAAUGUGGCGCCACAAAUGGCAUUAUUUUACCUAUCGCAUAGCUGGAAAGUCCGGCAUGAAGAUAAUAGUUCCUGAUUUGUGGCGCCACUUGGCUU
.((((((....)).))))((((...((.((((((((((((((((.(((((......((((.(((.(((((.....))))))))..))))))))).))..)))))))))))))))).)))) ( -46.20)
>DroAna_CAF1 66686 117 + 1
UGGCUGCCUCUGACGGAUAGACAAAAUAUUGGAGCCACAAAUGGAGAAAUCUUACCAAAGGCCAGUCUUUUGAGACCUCCCCUAAGGAAAGAGUUACUGGCA---AGAGCCACUUGACUU
((((((((..((((.......(((((.(((((..........(((....))).........))))).)))))...(((......))).....))))..))).---..)))))........ ( -28.11)
>consensus
AAUCCUCCCUUGAUCGAUAAGCAAAAAUGUGGCGCCACAAAGGGCAUUAUUUUACCUAUCGCAUAGCUGGUAAGACCAGCAUGAAGAAAAUGGUUCCUGAUUUGCGGCGCCACUUGGCUU
..................((((......((((((((.((((.((.(......).)).........((((((...))))))....................)))).))))))))...)))) (-19.05 = -21.00 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 15,647,270 – 15,647,390
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.50
Mean single sequence MFE -39.17
Consensus MFE -23.57
Energy contribution -24.30
Covariance contribution 0.73
Combinations/Pair 1.32
Mean z-score -2.81
Structure conservation index 0.60
SVM decision value 1.55
SVM RNA-class probability 0.963267
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15647270 120 - 23771897
AAGCCAAGUGGCGCCGCAAAUCAGGAACCACUUUCUUCAUGCCGGUCUUACCAACUAUCCGAUUGGUAAAAUAAUGCCCUUUGUGGCGCCACAUUUUUGCUUAUCGAUCAAGGGAGGAUU
.......(((((((((((((..(((((.....)))))..((((((((.............))))))))...........)))))))))))))((((((.(((.......))).)))))). ( -36.72)
>DroSec_CAF1 6918 120 - 1
AAGCCAAGUGGCGCCGCAAAUCAGGAACCACAUUCUUCAUGCUGGUCUUACCAACUAUGCGAUAGGUAAAAUAAUGCCCUUUGUGGCGCCACAUUUUUGCUUAUCGAUCAAGGGAGGUUU
(((((..(((((((((((((..((((.((((((.....))).)))))))...............((((......)))).)))))))))))))....((.(((.......))).))))))) ( -37.90)
>DroSim_CAF1 6931 120 - 1
AAGCCAAGUGGCGCCGCAAAUUAGGAACCACAUUCUUCAUGCUGGUCUUACCAACUAUGCGAUAGGUAAAAUAAUGCCCUUUGUGGCGCCACAUUUUUGCUUAUCGAUCAAGGGAGGAUU
.......(((((((((((((.(((((.((((((.....))).))))))))..............((((......)))).)))))))))))))((((((.(((.......))).)))))). ( -37.70)
>DroEre_CAF1 7339 120 - 1
AAGCCAAGUGGCGCCGCAGAUCAGGAACCAUUAUCUUCAUGCUGCACUUUCCAGCUAUGGGGUAGGUAAAAUAAUGCCAUUUGUGGCGCCGCAUUUCUGCUUAUCCAUCAAGGCAGGAUU
.......((((((((((((((.............((((((((((.......)))).))))))..((((......))))))))))))))))))..((((((((........)))))))).. ( -46.50)
>DroYak_CAF1 6975 120 - 1
AAGCCAAGUGGCGCCACAAAUCAGGAACUAUUAUCUUCAUGCCGGACUUUCCAGCUAUGCGAUAGGUAAAAUAAUGCCAUUUGUGGCGCCACAUUUUUGCUUAUCCAUCAAGGGAGGACU
.((((..((((((((((((((..........((((..(((((.((.....)).)).))).))))((((......))))))))))))))))))...........(((......))))).)) ( -42.00)
>DroAna_CAF1 66686 117 - 1
AAGUCAAGUGGCUCU---UGCCAGUAACUCUUUCCUUAGGGGAGGUCUCAAAAGACUGGCCUUUGGUAAGAUUUCUCCAUUUGUGGCUCCAAUAUUUUGUCUAUCCGUCAGAGGCAGCCA
....(((((((.(((---(((((....((((......))))((((((..........)))))))))))))).....)))))))(((((((.....((((.(.....).)))))).))))) ( -34.20)
>consensus
AAGCCAAGUGGCGCCGCAAAUCAGGAACCACUUUCUUCAUGCUGGUCUUACCAACUAUGCGAUAGGUAAAAUAAUGCCAUUUGUGGCGCCACAUUUUUGCUUAUCCAUCAAGGGAGGAUU
.......(((((((((((((....(((........)))..........................((((......)))).))))))))))))).(((((.(((.......))).))))).. (-23.57 = -24.30 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:30 2006