Locus 5770

Sequence ID 3L_DroMel_CAF1
Location 15,639,808 – 15,639,928
Length 120
Max. P 0.801661
window9166

overview

Window 6

Location 15,639,808 – 15,639,928
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.92
Mean single sequence MFE -25.14
Consensus MFE -23.26
Energy contribution -23.08
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.93
SVM decision value 0.62
SVM RNA-class probability 0.801661
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15639808 120 + 23771897
CCUAGUCACUUUGAGUUCAGCCCCCGCCCCGCCCCCUCCUUGAAUGACAGAUCACCGAAACCACUUGAGCCAUAUAGAGCCUGUCAGCUGAACUCAACCAGAACUCAGUUUAACUGAAGC
..........(((((((((((....((...))............((((((.....(((......))).((........))))))))))))))))))).......((((.....))))... ( -26.60)
>DroSec_CAF1 61861 120 + 1
CCUAGUCACUUUGAGUUCAGCCCCCGCCCCACCCCCUCUUUGAAUGACAGAUCACCGAAACCACUUGAGCCAUAUAGAGCCUGUCAGCUGAACUCAACCAGAACUCGGUUCAACUCAUGC
((.((((...(((((((((((..............(.....)..((((((.....(((......))).((........)))))))))))))))))))...).))).))............ ( -25.10)
>DroSim_CAF1 62910 120 + 1
CCUAGUCACUUUGAGUUCAGCCCCCGCCCCACCCCCUCUUCGAAUGACAGAUCACCGAAACCACUUGAGCCAUAUAGAGCCUGUCAGCUGAACUCAACCAGAACUCAGUUCAACUCAAGC
..........(((((((((((...((..............))..((((((.....(((......))).((........)))))))))))))))))))...((((...))))......... ( -23.64)
>DroYak_CAF1 66893 112 + 1
CCUAGUCACUUUGAGUUCAGCCCC--------GCCCUCUACGAAUGACAGAUCACCGAAACCACUUGAGCCAUAUAGAGCCUGUCAGCUGAACUCAACCAGAACUCAGUUCAACUCAAGC
..........(((((((((((..(--------(.......))..((((((.....(((......))).((........)))))))))))))))))))...((((...))))......... ( -25.20)
>consensus
CCUAGUCACUUUGAGUUCAGCCCCCGCCCCACCCCCUCUUCGAAUGACAGAUCACCGAAACCACUUGAGCCAUAUAGAGCCUGUCAGCUGAACUCAACCAGAACUCAGUUCAACUCAAGC
..........(((((((((((..............(.....)..((((((.....(((......))).((........)))))))))))))))))))...((((...))))......... (-23.26 = -23.08 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:28 2006