Locus 577

Sequence ID 3L_DroMel_CAF1
Location 1,653,752 – 1,653,842
Length 90
Max. P 0.769534
window881

overview

Window 1

Location 1,653,752 – 1,653,842
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.71
Mean single sequence MFE -32.82
Consensus MFE -17.98
Energy contribution -18.32
Covariance contribution 0.34
Combinations/Pair 1.28
Mean z-score -2.37
Structure conservation index 0.55
SVM decision value 0.53
SVM RNA-class probability 0.769534
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1653752 90 + 23771897
AAAGCUACCUUACACCCC-----CUGCUUUGCAUUGCAAAUGCAGGUGCUC---GAUAAGAGCAGCUCGGGUGUGGGUUAGUUCCG-A---UAGGGAGAAGG
...((((.((((((((((-----(((((((((...))))).)))))(((((---.....)))))....))))))))).))))(((.-.---...)))..... ( -38.90)
>DroSec_CAF1 15914 90 + 1
GGAGCUACUUUACACCCC-----CUGCUUUGCAUUGUAAAUGCAAGUGCUC---GAUAAGAGCAGCCCAGGUGUGGGUUAGUUCCG-A---UAGGGAGAAGG
(((((((.((((((((..-----..(((((((((.....)))))))(((((---.....)))))))...)))))))).))))))).-.---........... ( -33.70)
>DroSim_CAF1 16024 89 + 1
GGAGCUAACUUACACCCC-----CUGCUUUGCAUUGUAAAUGCAGGUUCUC---GAUAAGAGCAGCUC-GGUGUGGGUUAGUUCCG-A---UAGGAAGAAGG
((((((((((((((((.(-----(((((((((...))))).)))))..(((---.....)))......-)))))))))))))))).-.---........... ( -38.20)
>DroEre_CAF1 19530 90 + 1
GCAGCUACCUUACACCCC-----GUGCUUUGCAUUGCAAACGCAGGUGCUU---GAUAAGAGCAGCUCGGGUGUGGGUUGGUUCCG-A---UAGGGAGAAGG
...((((.(((((((((.-----(((.(((((...))))))))((.(((((---.....))))).)).))))))))).))))(((.-.---...)))..... ( -32.80)
>DroYak_CAF1 15769 93 + 1
GCAGCUACCUUACACCCC-----GUGUUUUGCAUUGUAAAUGCAGGUGCUUCUGGAUAAGAGCAGCUCGGGUGUGGGUUAGUUCCG-A---UAGGAAGAAGG
...((((.(((((((((.-----......(((((.....)))))(.((((.((.....)))))).)..))))))))).))))(((.-.---..)))...... ( -31.10)
>DroPer_CAF1 17248 99 + 1
GAGGCUAUCUUACACUCCGAGCUGUGUUUUGAAUUGUAAAUGCAGGUGUCU---GAUAAGAGCAACUAAAACUAGGCUUACUUCAUGGUUCAAGGUGGCAGG
...((((((((.....((((.((((((((........)))))))).)...(---((...((((..(((....)))))))...))))))...))))))))... ( -22.20)
>consensus
GAAGCUACCUUACACCCC_____CUGCUUUGCAUUGUAAAUGCAGGUGCUC___GAUAAGAGCAGCUCGGGUGUGGGUUAGUUCCG_A___UAGGGAGAAGG
..(((((.((((((((........((((((((...))))).)))(.(((((........))))).)...)))))))).)))))((........))....... (-17.98 = -18.32 +   0.34) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:44 2006