| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,636,961 – 15,637,121 |
| Length | 160 |
| Max. P | 0.763976 |
| Location | 15,636,961 – 15,637,081 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.25 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -20.76 |
| Energy contribution | -21.08 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.763976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15636961 120 - 23771897 CAUCAAUCCGAGUUGCACCUUGCUGCUCUGCUUUCAUUCUCAGCAUCAUUACACAUUCUAACCGCAGGAUCGCAGUCAGACAACAUCCUUCUCACAUGGAAUUAUCAAAUUGCACCUGCU .........((((.((.....)).))))((((.........))))..................(((((...(((((..((.....(((.........)))....))..))))).))))). ( -23.50) >DroSec_CAF1 59054 120 - 1 CAUCAAUCCGAGUUGCACCUUGCUGCUCUGCUUUCAUUCUCAGCAUCAUUACACAUUCUAACUGCAGGAUCGCAGUCAGACAACAUCCUUCUCACAUGGAAUUAUCAAAUUGCACCUGCU .........((((.((.....)).))))((((.........))))..................(((((...(((((..((.....(((.........)))....))..))))).))))). ( -23.20) >DroSim_CAF1 60038 120 - 1 CAUCAAUCUGAGUUGCACCUUGCUGCUCUGCUUUCAUUCUCAGCAUCAUUACACAUUCUAACCGCAGGAUCGCAGUCAGACAACAUCCUUCUCACAUGGAAUUAUCAAAUUGCACCUGCU .........((((.((.....)).))))((((.........))))..................(((((...(((((..((.....(((.........)))....))..))))).))))). ( -23.20) >DroYak_CAF1 63987 120 - 1 CAUCAAUGCAAGGUGCAACUUGCAGCUAUGUUUUCAUUCUCAGCAUCAUUACACAUUCUAACCGCAGGAUCGCAGUCAGACAACAUCCUUCUCACAUGGAAUUAUCAAAUUGCACCUGCU ......((((((......))))))(((..(........)..)))...................(((((...(((((..((.....(((.........)))....))..))))).))))). ( -25.30) >consensus CAUCAAUCCGAGUUGCACCUUGCUGCUCUGCUUUCAUUCUCAGCAUCAUUACACAUUCUAACCGCAGGAUCGCAGUCAGACAACAUCCUUCUCACAUGGAAUUAUCAAAUUGCACCUGCU .........((((.((.....)).))))((((.........))))..................(((((...(((((..((.....(((.........)))....))..))))).))))). (-20.76 = -21.08 + 0.31)
| Location | 15,637,001 – 15,637,121 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.19 |
| Mean single sequence MFE | -35.83 |
| Consensus MFE | -30.40 |
| Energy contribution | -30.65 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15637001 120 + 23771897 UCUGACUGCGAUCCUGCGGUUAGAAUGUGUAAUGAUGCUGAGAAUGAAAGCAGAGCAGCAAGGUGCAACUCGGAUUGAUGGAUGCGGUGUCCUCUUGACCGUAAAUUAUCGUUAGACACA ((((((((((....)))))))))).(((.(((((((((((((.......((...)).((.....))..))))).........((((((.........))))))...)))))))).))).. ( -36.30) >DroSec_CAF1 59094 120 + 1 UCUGACUGCGAUCCUGCAGUUAGAAUGUGUAAUGAUGCUGAGAAUGAAAGCAGAGCAGCAAGGUGCAACUCGGAUUGAUGGAUGCGGUGUGCUCUUGACCGUAAAUUAUCGUUAGACACA ((((((((((....)))))))))).(((.(((((((((((....((....))...)))).(((.(((..(((.(((....))).)))..))).)))...........))))))).))).. ( -37.20) >DroSim_CAF1 60078 120 + 1 UCUGACUGCGAUCCUGCGGUUAGAAUGUGUAAUGAUGCUGAGAAUGAAAGCAGAGCAGCAAGGUGCAACUCAGAUUGAUGGAUGCGGUGUGCUCUUGACCGUAAAUUAUCGUUAGACACA ((((((((((....)))))))))).(((.(((((((((((((.......((...)).((.....))..))))).........((((((.........))))))...)))))))).))).. ( -37.00) >DroYak_CAF1 64027 120 + 1 UCUGACUGCGAUCCUGCGGUUAGAAUGUGUAAUGAUGCUGAGAAUGAAAACAUAGCUGCAAGUUGCACCUUGCAUUGAUGGAUGUUGACUCCACUUGACCGAAAAUUAUCGUUAGACACA ((((((((((....)))))))))).(((.(((((((((((.(........).))))((((((......))))))(..(((((.(....))))).)..).........))))))).))).. ( -32.80) >consensus UCUGACUGCGAUCCUGCGGUUAGAAUGUGUAAUGAUGCUGAGAAUGAAAGCAGAGCAGCAAGGUGCAACUCGGAUUGAUGGAUGCGGUGUCCUCUUGACCGUAAAUUAUCGUUAGACACA ((((((((((....)))))))))).(((.(((((((((((((..((....))..((........))..))))).........((((((.........))))))...)))))))).))).. (-30.40 = -30.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:25 2006