| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,636,654 – 15,636,769 |
| Length | 115 |
| Max. P | 0.706834 |
| Location | 15,636,654 – 15,636,769 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -10.30 |
| Consensus MFE | -9.11 |
| Energy contribution | -8.93 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.706834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15636654 115 - 23771897 A-----AACACAAACCAAAAACCCAGCCAACCAACCAAGCUGCAAAAACACAAAACUGUAAAUCAGUGCAAUUAAAUGCGACUUUUCAACAAAAUUUACUGAAAAUUUAUGACAACAAAC .-----.................((((...........))))...............(((((((((((((......)))((....))..........)))))...))))).......... ( -9.10) >DroSec_CAF1 58765 102 - 1 --------------CCAAAAACCCAGCCA----ACCAAGCUGCAAAAACACAAAACUGUAAAUCAGUGCAAUUAAAUGCGACUUUUCAACAAAAUUUACUGAAAAUUUAUGACAACAAAC --------------.........((((..----.....))))...............(((((((((((((......)))((....))..........)))))...))))).......... ( -9.80) >DroSim_CAF1 59733 111 - 1 A-----AACCCAAACCAAAAACCCAGCCA----ACCAAGCUGCAAAAACACAAAACUGUAAAUCAGUGCAAUUAAAUGCGACUUUUCAACAAAAUUUACUGAAAAUUUAUGACAACAAAC .-----.................((((..----.....))))...............(((((((((((((......)))((....))..........)))))...))))).......... ( -9.80) >DroYak_CAF1 63681 120 - 1 AACCGAAACCCAAACAAAAAACCCGGCCAACCAGCCAAGCUGCAAAAACACAAAACUGUAAAUCAGUGCAAUUAAAUGCGACUUUUCAACAAAAUGUACUGAAAAUUUAUGACAACAAAC ....(((.................(((......)))(((.((((..........((((.....)))).........)))).))))))................................. ( -12.51) >consensus A_____AACCCAAACCAAAAACCCAGCCA____ACCAAGCUGCAAAAACACAAAACUGUAAAUCAGUGCAAUUAAAUGCGACUUUUCAACAAAAUUUACUGAAAAUUUAUGACAACAAAC .......................((((...........))))...............(((((((((((((......)))((....))..........)))))...))))).......... ( -9.11 = -8.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:23 2006