Locus 5763

Sequence ID 3L_DroMel_CAF1
Location 15,634,635 – 15,634,749
Length 114
Max. P 0.857600
window9150

overview

Window 0

Location 15,634,635 – 15,634,749
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.91
Mean single sequence MFE -23.63
Consensus MFE -18.16
Energy contribution -18.79
Covariance contribution 0.63
Combinations/Pair 1.12
Mean z-score -1.89
Structure conservation index 0.77
SVM decision value 0.81
SVM RNA-class probability 0.857600
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15634635 114 - 23771897
CGUAUCUCCACUUGAGCUGACCACACAGUCACGUUCUUAAGUCACCCUUAGAUAUUUAUUACCUGAAAAUAUUCCAAUGCUUUCUAUUUAGGUAUUUGGGAUUAUUUCG------ACUUU
.(((((.......((((((((......)))).)))).((((.....)))))))))........(((((..((((((((((((.......))))).)))))))..)))))------..... ( -22.10)
>DroSec_CAF1 56854 114 - 1
CGUAUCUCCACUUGAGCUGACCACACAGUCACGUUCUCAAGUCACCCUUAGAUAUUUAAUACCUGAAAAUAGUUGAGUGCUUUCAUUUUAGGUAUUGAGGAUUAAUUCG------AGUUU
......((((((((((.((((......))))....))))))).............(((((((((((((..(((.....)))....))))))))))))))))........------..... ( -27.10)
>DroSim_CAF1 57812 114 - 1
CGUAUCUCCACUUGAGCUGACCACACAGUCACGUUCUCAAGUCACCCUUAGAUAUUUAAUACCUGAAAAUAGUUCAGUGCUUUCAUUUUAGGUAUUGAGGAUUAAUUCG------AGUUU
......((((((((((.((((......))))....))))))).............(((((((((((((..(((.....)))....))))))))))))))))........------..... ( -27.10)
>DroYak_CAF1 61676 119 - 1
CACAUCUCCACUUGAGCUGACCACACAGUCACUCUCUUAAGUCACCCUUAAAUGUUAAAUACCUGGAAUUAUUCUGUAGUUUUCCCUUUAAGUAUC-AGGAUAAAAUACAUAUACAGACU
......((((...(((.((((......)))))))..(((((.....)))))............)))).((((((((((.((........)).)).)-)))))))................ ( -18.20)
>consensus
CGUAUCUCCACUUGAGCUGACCACACAGUCACGUUCUCAAGUCACCCUUAGAUAUUUAAUACCUGAAAAUAGUCCAGUGCUUUCAUUUUAGGUAUUGAGGAUUAAUUCG______AGUUU
......((((((((((.((((......))))....))))))).............((((((((((((...................)))))))))))))))................... (-18.16 = -18.79 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:12 2006