Locus 5762

Sequence ID 3L_DroMel_CAF1
Location 15,634,139 – 15,634,259
Length 120
Max. P 0.774586
window9149

overview

Window 9

Location 15,634,139 – 15,634,259
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -34.95
Consensus MFE -33.36
Energy contribution -33.67
Covariance contribution 0.31
Combinations/Pair 1.02
Mean z-score -1.69
Structure conservation index 0.95
SVM decision value 0.54
SVM RNA-class probability 0.774586
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15634139 120 + 23771897
UAGUUCCACAGUUGGAAAGUUGGCAAAUGAAACUUGGCUGGGAGUCCUGUCAACGGUUUCGGUGUAUAUAAAUCUGUUUGCCAUUUGCAUAUGUAAUAAGUGCGAGGACAUUUCACUGAU
........((((.((((.((((((((((((((((((((.((....)).))))..))))))(((........))).))))))).(((((((.........)))))))))).)))))))).. ( -34.00)
>DroSec_CAF1 56406 120 + 1
UGGCUCCACAGUUGGAAAGUUGGCAAAUGAAAGUUGGCUGGGAGUCCUGUCAACGGUUUCGGUGUAUAUAAAUCUGUUUGCCAUUUGCAUAUGUAAUAAGUGCGAGGACAUUCCACUGAU
........((((.((((.(((((((((((((.((((((.((....)).))))))...)))(((........))).))))))).(((((((.........)))))))))).)))))))).. ( -36.30)
>DroSim_CAF1 57364 120 + 1
UAGCUCCACAGUUGGAAAGUUGGCAAAUGAAAGUUGGCUGGGAGUCCUGUCAACGGUUUCGGUGUAUAUAAAUCUGUUUGCCAUUUGCAUAUGUAAUAAGUGCGAGGACAUUCCACUGAU
........((((.((((.(((((((((((((.((((((.((....)).))))))...)))(((........))).))))))).(((((((.........)))))))))).)))))))).. ( -36.30)
>DroYak_CAF1 61171 120 + 1
CAGCUCCACAGUUGGAAAGUUGGCAAAUGAAAGUUGGCUGCGGGUCCUGUCAACAUUUUCGGUGUAUAUAAAUCUGUUUGCCAUUUGCAUAUGUAAUAAGUGCGAGGACAUUCCACUGAU
........((((.((((.((((((((((((((((((((..........))))))..))))(((........))).))))))).(((((((.........)))))))))).)))))))).. ( -33.20)
>consensus
UAGCUCCACAGUUGGAAAGUUGGCAAAUGAAAGUUGGCUGGGAGUCCUGUCAACGGUUUCGGUGUAUAUAAAUCUGUUUGCCAUUUGCAUAUGUAAUAAGUGCGAGGACAUUCCACUGAU
........((((.((((.((((((((((((((((((((.((....)).))))))..))))(((........))).))))))).(((((((.........)))))))))).)))))))).. (-33.36 = -33.67 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:11 2006