Locus 5757

Sequence ID 3L_DroMel_CAF1
Location 15,631,946 – 15,632,055
Length 109
Max. P 0.992796
window9137 window9138

overview

Window 7

Location 15,631,946 – 15,632,055
Length 109
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -32.85
Consensus MFE -32.85
Energy contribution -32.85
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 1.00
SVM decision value 1.09
SVM RNA-class probability 0.913802
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15631946 109 + 23771897
AUUU-----UCUUGUGUAUUUUUUGGCUGCGGUCAAUGUUCUUGGCCAGGCCAGCAGUUGUGGUCAACCAAGUGUUGGACAGCAUUAUAAAUAUUUGAGCUUGCCCUUGCAGCU
....-----...............((((((((((((.....)))))).(((.(((.((((....))))((((((((.............)))))))).))).)))...)))))) ( -32.72)
>DroSec_CAF1 54191 114 + 1
AUUUUAUUUUUUUGUGUAUUUUUGGGCUGCGGUCAAUGUUCUUGGCCAGGCCAGCAGUUGUGGUCAACCAAGUGUUGGACAGCAUUAUAAAUAUUUGAGCUUGCCCUUGCAGCU
........................((((((((((((.....)))))).(((.(((.((((....))))((((((((.............)))))))).))).)))...)))))) ( -32.92)
>DroSim_CAF1 55148 113 + 1
AUUUUAUUU-UUUGUGUAUUUUUGGGCUGCGGUCAAUGUUCUUGGCCAGGCCAGCAGUUGUGGUCAACCAAGUGUUGGACAGCAUUAUAAAUAUUUGAGCUUGCCCUUGCAGCU
.........-..............((((((((((((.....)))))).(((.(((.((((....))))((((((((.............)))))))).))).)))...)))))) ( -32.92)
>consensus
AUUUUAUUUUUUUGUGUAUUUUUGGGCUGCGGUCAAUGUUCUUGGCCAGGCCAGCAGUUGUGGUCAACCAAGUGUUGGACAGCAUUAUAAAUAUUUGAGCUUGCCCUUGCAGCU
........................((((((((((((.....)))))).(((.(((.((((....))))((((((((.............)))))))).))).)))...)))))) (-32.85 = -32.85 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 15,631,946 – 15,632,055
Length 109
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 95.32
Mean single sequence MFE -27.66
Consensus MFE -27.66
Energy contribution -27.66
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.82
Structure conservation index 1.00
SVM decision value 2.35
SVM RNA-class probability 0.992796
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15631946 109 - 23771897
AGCUGCAAGGGCAAGCUCAAAUAUUUAUAAUGCUGUCCAACACUUGGUUGACCACAACUGCUGGCCUGGCCAAGAACAUUGACCGCAGCCAAAAAAUACACAAGA-----AAAU
.(((((..(((((.((...............)))))))....((((((((.((((....).)))..))))))))..........)))))................-----.... ( -27.66)
>DroSec_CAF1 54191 114 - 1
AGCUGCAAGGGCAAGCUCAAAUAUUUAUAAUGCUGUCCAACACUUGGUUGACCACAACUGCUGGCCUGGCCAAGAACAUUGACCGCAGCCCAAAAAUACACAAAAAAAUAAAAU
.(((((..(((((.((...............)))))))....((((((((.((((....).)))..))))))))..........)))))......................... ( -27.66)
>DroSim_CAF1 55148 113 - 1
AGCUGCAAGGGCAAGCUCAAAUAUUUAUAAUGCUGUCCAACACUUGGUUGACCACAACUGCUGGCCUGGCCAAGAACAUUGACCGCAGCCCAAAAAUACACAAA-AAAUAAAAU
.(((((..(((((.((...............)))))))....((((((((.((((....).)))..))))))))..........)))))...............-......... ( -27.66)
>consensus
AGCUGCAAGGGCAAGCUCAAAUAUUUAUAAUGCUGUCCAACACUUGGUUGACCACAACUGCUGGCCUGGCCAAGAACAUUGACCGCAGCCCAAAAAUACACAAAAAAAUAAAAU
.(((((..(((((.((...............)))))))....((((((((.((((....).)))..))))))))..........)))))......................... (-27.66 = -27.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:01 2006