Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,630,936 – 15,631,056 |
Length | 120 |
Max. P | 0.989727 |
Location | 15,630,936 – 15,631,056 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -40.10 |
Consensus MFE | -39.06 |
Energy contribution | -39.88 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -2.66 |
Structure conservation index | 0.97 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15630936 120 + 23771897 CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAUUUAUGUAAGAGGAUGCACCUAGAAAAAA ...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((((....))))))))).)))..)))))))).)))))...... ( -43.20) >DroSec_CAF1 53220 120 + 1 CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAGUUAUGUAAGAGGAUGCACCUAGAAAAAA ...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....(((((.((((((....)))))).)).)))..)))))))).)))))...... ( -41.70) >DroSim_CAF1 54182 120 + 1 CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAUUUAUGUAAGAGGAUGCACCUAGAAAAAA ...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((((....))))))))).)))..)))))))).)))))...... ( -43.20) >DroYak_CAF1 57754 119 + 1 CGACUGAGCAGCAAGGAGUCCUGGUCCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUCCGUAGUUGGGAUUUAUGUAAGAGGAUGCACCCAGAAAAA- ...(((...........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((........))))))).)))..))))))))...))).....- ( -32.30) >consensus CGACUGGGCAGCAAGGAGUCCUGGUUCACAGGACAAGUGUUUUCGGCGAUAACAAAAGGUGUUGCACAAACGAGGUCCUGGCUAGCCGGGAUUUAUGUAAGAGGAUGCACCUAGAAAAAA ...(((((.........((((((.....))))))..((((((((.((((((.(....).))))))....((((((((((((....))))))))).)))..)))))))).)))))...... (-39.06 = -39.88 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:54 2006