Locus 5754

Sequence ID 3L_DroMel_CAF1
Location 15,630,705 – 15,630,825
Length 120
Max. P 0.980641
window9130

overview

Window 0

Location 15,630,705 – 15,630,825
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -35.46
Consensus MFE -32.94
Energy contribution -33.38
Covariance contribution 0.44
Combinations/Pair 1.10
Mean z-score -2.84
Structure conservation index 0.93
SVM decision value 1.87
SVM RNA-class probability 0.980641
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15630705 120 + 23771897
GCUGGCAAACAAAACAAAUCCAUAAAAUUUAGCCGGCUAGACAGAUAAAUCGAGCAGAAAACGUCGGUGAAGCCGGCGACGUGUUUGGAGCUGUUGACAUGCCACGAACUUGAAAACAAU
..(((((.....((((..((((.........(((((((..((.(((...((.....))....))).))..)))))))........))))..))))....)))))................ ( -33.23)
>DroSec_CAF1 52980 120 + 1
GCUGGUAAACAAAACAAAUCCAUAAAAUUUCGCCGGCUAGACAGAUAAAUCGAGCAGAAAACUUCGGUGAAGCCGGCGACGUGUUUGGAGCUGUUGACAUGCCACGAACCUGAAAACAAU
..(((((.....((((..((((....((.(((((((((..((.((....((.....)).....)).))..))))))))).))...))))..))))....)))))................ ( -35.00)
>DroSim_CAF1 53986 120 + 1
GCUGGUAAACAAAACAAAUCCAUAAAAUUUCGCCGGCUAGACAGAUAAAUCGAGCAGAGAACCUCGGUGAAGCCGGCGACGUGUUUGGAGCUGUUGACAUGCCACGAACCUGAAAACAAU
..(((((.....((((..((((....((.(((((((((..........((((((........))))))..))))))))).))...))))..))))....)))))................ ( -36.40)
>DroYak_CAF1 57516 120 + 1
GCUGGCAAACAAAACAAAUCCAUAAAAUGUAGCCGGCUAGACAGAUAAAUCGAGCAGAAAACCUCGAUGAAGCCGGCGACGUGUUGGGAGCUGUUGACAUGCCACGAACCUGAAAACAAU
..(((((.....((((..(((.....((((.(((((((..........((((((........))))))..))))))).))))....)))..))))....)))))................ ( -37.20)
>consensus
GCUGGCAAACAAAACAAAUCCAUAAAAUUUAGCCGGCUAGACAGAUAAAUCGAGCAGAAAACCUCGGUGAAGCCGGCGACGUGUUUGGAGCUGUUGACAUGCCACGAACCUGAAAACAAU
..(((((.....((((..((((....((.(((((((((..........((((((........))))))..))))))))).))...))))..))))....)))))................ (-32.94 = -33.38 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:53 2006