| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,651,671 – 1,651,772 |
| Length | 101 |
| Max. P | 0.954689 |
| Location | 1,651,671 – 1,651,772 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Mean single sequence MFE | -42.00 |
| Consensus MFE | -24.08 |
| Energy contribution | -24.00 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1651671 101 + 23771897 GCCGAGGGAGCAGCCUCCUUCUUGCCGGCAGCGGGAGCCGCA---GCAGUCUUCUUCUGCUCUGGCUUCUUGUCGCCAGGCUUGGCUGUAAACAG--AAGAGCG---CG-- ...(((((((....)))))))..((.(((.((((((((((.(---((((.......))))).)))).)))))).)))..((((..(((....)))--..)))))---).-- ( -46.90) >DroVir_CAF1 15232 105 + 1 GCAGCUGGUG---CCUCCUUCUUGGCAGCAGCAGGCGCCGCCGCGGCCGCCUUCUUCUGCUCUGGCUUCUUAUCGCCAGGCUUUGCUGCAAUUGGCAAUUAACA---AUAU ...((..(((---((........))).(((((((((((((...))).)))).......((.(((((........)))))))..)))))).))..))........---.... ( -42.70) >DroPse_CAF1 14837 92 + 1 GCAGCUGGUG---CCUCCUUCUUGGCAGCAGCCGGGGCCGCA---G---CCUUCUUCUGCUCUGGCUUCUUAUCGCCAGGCUUGGCUGCAAGCGG--AA---CA---CC-- ((.((((.((---((........)))).)))).......(((---(---((.......((.(((((........)))))))..))))))..))..--..---..---..-- ( -39.60) >DroWil_CAF1 16277 98 + 1 GUAGCUGGAGC---AUCCUUCUUGCCAGCAGCAGGAGCUGCG---GCAGGUUUCUUCUGCUCUGGCUUCUUAUCGCCGGACUUGGCUGCAAAUAC--AGAAACA---CA-- (((((..(.((---(.....((((((.(((((....))))))---))))).......)))((((((........)))))).)..)))))......--.......---..-- ( -38.70) >DroAna_CAF1 13433 104 + 1 GCGGCGGGAG---CCUCCUUCUUGCCGGCAGCGGGAGCCGCGGCGGCAGCCUUCUUCUGCUCUGGCUUCUUGUCGCCAGGCUUGGCUGUAAACAU--CAGAGCGGAACA-- ((((((((..---...)))((((((.....)))))))))))(((....)))...(((((((((((....(((..(((......)))..)))...)--))))))))))..-- ( -44.50) >DroPer_CAF1 14969 92 + 1 GCAGCUGGUG---CCUCCUUCUUGGCAGCAGCCGGGGCCGCA---G---CCUUCUUCUGCUCUGGCUUCUUAUCGCCAGGCUUGGCUGCAAGCGG--AA---CA---CC-- ((.((((.((---((........)))).)))).......(((---(---((.......((.(((((........)))))))..))))))..))..--..---..---..-- ( -39.60) >consensus GCAGCUGGAG___CCUCCUUCUUGCCAGCAGCAGGAGCCGCA___GCAGCCUUCUUCUGCUCUGGCUUCUUAUCGCCAGGCUUGGCUGCAAACAG__AA_A_CA___CA__ (((((..(..................(((((.(((((..((....))...))))).)))))(((((........)))))..)..)))))...................... (-24.08 = -24.00 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:42 2006