Locus 5747

Sequence ID 3L_DroMel_CAF1
Location 15,621,367 – 15,621,474
Length 107
Max. P 0.803316
window9113

overview

Window 3

Location 15,621,367 – 15,621,474
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.86
Mean single sequence MFE -28.30
Consensus MFE -18.56
Energy contribution -19.04
Covariance contribution 0.48
Combinations/Pair 1.17
Mean z-score -2.08
Structure conservation index 0.66
SVM decision value 0.62
SVM RNA-class probability 0.803316
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15621367 107 - 23771897
AAGAUCCGAACUUUAGGGAAAUUUUCCAUGCUACACGGGCAAACAGAGUGGCGCCUAUUAAUA-------------CAUGUCCCAAAAUUUGCAGCCGCCCGAGUUCAUGUCUAUAAUUA
.((((..(((((...((((....))))........(((((...((((.(((.((.........-------------...)).)))...)))).....))))))))))..))))....... ( -23.70)
>DroSec_CAF1 44163 107 - 1
AAGAUCUGAACUUGAGGGAAAUUUUCCACGCUACAUGUGCAAACAGAGUGGCGCUUAUUAAUA-------------CAUGUCCCAAAAUUUGCAGUCGCCCGAGUUCAUGUCUAUAAUUA
.((((.((((((((.((((.(((.....((((((.(((....)))..))))))......))).-------------....)))).......((....)).)))))))).))))....... ( -28.90)
>DroSim_CAF1 44735 107 - 1
AAGAUCUGAACUUGAGGAAAAUUUUCCACGCUACAUGUGCAAACAGAGUGGCGCCUAUUAAUA-------------CCUGUCCCAAAAUUUGCAGCCGCCCGAGUUCAUAUCUAUAAUUA
.((((.((((((((.((((....)))).((((((.(((....)))..))))))..........-------------.((((..........)))).....)))))))).))))....... ( -27.60)
>DroEre_CAF1 44814 119 - 1
AAGAUCUGAACUUGGGAGAAAUUUUCCACGUUACACGUGCAAACACAGUGGCGCUUAUUAAUAAGUUGCCUAAAUACAUAACCCACAAUUUGCAGCGGC-CGAGUUCAUGUCUAUAAUUA
.((((.(((((((((((((...))))).((((.((.(((....)))...((((((((....)))).))))....................)).))))..-)))))))).))))....... ( -29.90)
>DroYak_CAF1 47362 119 - 1
AAGAUCUGAACUUGACGAAAAUUUUCCACGCUACUCGUGCAAAC-CGAUGGCGCUUAUAAAUAAGUUGCCUAUUUGCAUGUCCCAAAAUGUGCAGCGACCCGAGUUCAUGUCUAUAAUUA
.((((.((((((((..(((....)))..((((.(.((((((((.-....((((((((....)))).))))..))))))))...........).))))...)))))))).))))....... ( -31.40)
>consensus
AAGAUCUGAACUUGAGGGAAAUUUUCCACGCUACACGUGCAAACAGAGUGGCGCUUAUUAAUA_____________CAUGUCCCAAAAUUUGCAGCCGCCCGAGUUCAUGUCUAUAAUUA
.((((.((((((((.((((....)))).((((((..((....))...))))))...............................................)))))))).))))....... (-18.56 = -19.04 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:37 2006