Locus 5745

Sequence ID 3L_DroMel_CAF1
Location 15,618,815 – 15,618,928
Length 113
Max. P 0.881569
window9110

overview

Window 0

Location 15,618,815 – 15,618,928
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.16
Mean single sequence MFE -41.23
Consensus MFE -34.83
Energy contribution -35.07
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.91
Structure conservation index 0.84
SVM decision value 0.92
SVM RNA-class probability 0.881569
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15618815 113 - 23771897
GUCUGG------GACUUGGAAACAUUUUCGACUUGGUCUUGGAUUCGGCUGGGGAGCAGUGGUUUCGGUUCCGUAGCCGGUU-UUUUGGACCGGAGUUUGGCGUCGUGUCGUUGACAGCU
(((..(------((..((....))..)))((((((((((..((.(((((((.(((((.(......).))))).)))))))..-))..))))).))))).)))((((......)))).... ( -42.30)
>DroSec_CAF1 41824 114 - 1
GUCUGG------GACUUGGAAACAUUUUCGACUUGGUCUUGGAUUCGGCUGUGGAGCAGUGGUUUCAGUUCCGUAGCCGUUUUUUUUGGACCGGAGUUUGGCGUCGUGUCGUUGACAGCU
(((..(------((..((....))..)))((((((((((.(((..((((((((((((..........))))))))))))..)))...))))).))))).)))((((......)))).... ( -40.60)
>DroSim_CAF1 42157 113 - 1
GUCUGG------GACUUGGAAACAUUUUCGACUUGGUCUUGGAUUUGGCUGUGGAGCAGUGGUUUCAGUUCCGUAGCCGGUU-UUUUGGACCGGAGUUUGGCGUCGUGUCGUUGACAGCU
(((..(------((..((....))..)))((((((((((..((.(((((((((((((..........)))))))))))))..-))..))))).))))).)))((((......)))).... ( -38.70)
>DroEre_CAF1 41928 118 - 1
GUCUUGGACUUGGACUUGGAAACAUUUCGGACUUGGUCUUGGAUUUGGCUGUGGAGCAUUGGCUUCGGU-UCGCAGCCGGUUU-CUUGGCCCGGAGUUUGGCGUCGUGUCGUUGACAGCU
(((...(((...(((.((....))..((((((((((((..(((.(((((((((((.(.........).)-)))))))))).))-)..))))..)))))))).)))..)))...))).... ( -43.30)
>consensus
GUCUGG______GACUUGGAAACAUUUUCGACUUGGUCUUGGAUUCGGCUGUGGAGCAGUGGUUUCAGUUCCGUAGCCGGUU_UUUUGGACCGGAGUUUGGCGUCGUGUCGUUGACAGCU
(((.........((..((....))..)).((((((((((..((.(((((((((((((..........)))))))))))))...))..))))).))))).)))((((......)))).... (-34.83 = -35.07 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:34 2006