Locus 5743

Sequence ID 3L_DroMel_CAF1
Location 15,613,999 – 15,614,119
Length 120
Max. P 0.514542
window9108

overview

Window 8

Location 15,613,999 – 15,614,119
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.25
Mean single sequence MFE -29.67
Consensus MFE -19.64
Energy contribution -21.72
Covariance contribution 2.08
Combinations/Pair 1.04
Mean z-score -1.74
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.514542
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15613999 120 + 23771897
CUAACACGGCCAGAUGAGGAUGUGGCAAGUAGUGAUAAUGAGAUGACAAUGUCGUAUGAUUAUCACAAUGAAAACCAUGACAGUACUAACCACCCAGGUCCUCAAGAAGAUGCUACAACU
.......(((....(((((((((((..((((((((((((.(.(((((...))))).).)))))))).(((.....))).....))))..))))....))))))).......)))...... ( -31.00)
>DroSec_CAF1 37073 120 + 1
CUAACACGGCCAGAUGAGGAUGUGGCAAGUAGUGAUAAUGAGAUGACCAUGUCGUAUGAUUAUCACAACGAAAACCAUGACAGUACUGACCACCCAGACCAUCAAGUAGAUAUAUCAACU
(((...((((((.((....)).)))).....((((((((.(.(((((...))))).).))))))))..)).......(((..((.(((......)))))..)))..)))........... ( -26.60)
>DroSim_CAF1 37115 120 + 1
CUAACAAGGCCAGAUGAGGAUGUGGCAAGUAGUGAUAAUGAGAUGACAGUGUCGUAUGAUUAUCACAAUGAAAACCAUGACAGUACUAACCACCCAGAUCCUCAAGUAGAUGUAUCAACU
...(((..((....(((((((((((..((((((((((((.(.(((((...))))).).)))))))).(((.....))).....))))..))))....))))))).))...)))....... ( -30.20)
>DroEre_CAF1 37485 114 + 1
CUAACACGGCCUGAUG------UGGCUGAUAGUGAUAAUGAGAUGACAACGUCGUAUGAUUAUCACCAUGAAAUCCAUGACAGUACUAACCACCCAGAUACUCAAGCAGAAUUGUCAACU
......(((((.....------.)))))...((((((((.(.(((((...))))).).))))))))...........(((((((.((....................)).)))))))... ( -26.35)
>DroYak_CAF1 39727 120 + 1
CUUACACGGCCUGAUGUGGAUGUGGCUGAUAGUGAUAAUGAGAUGACCACGUCGUAUGUUUAUCACAAUGAACACCACGACAGUACCAUCCACCCAGAUCCCCAAUGGGAAUUAUCAACU
..........(((..(((((((..((((...(((((((....(((((...)))))....)))))))..((.....))...))))..))))))).))).((((....)))).......... ( -34.20)
>consensus
CUAACACGGCCAGAUGAGGAUGUGGCAAGUAGUGAUAAUGAGAUGACAAUGUCGUAUGAUUAUCACAAUGAAAACCAUGACAGUACUAACCACCCAGAUCCUCAAGUAGAUGUAUCAACU
..............(((((((.(((......((((((((.(.(((((...))))).).)))))))).(((.....)))...............))).)))))))................ (-19.64 = -21.72 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:31 2006