Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,649,399 – 1,649,519 |
Length | 120 |
Max. P | 0.570806 |
Location | 1,649,399 – 1,649,519 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.67 |
Mean single sequence MFE | -35.85 |
Consensus MFE | -21.36 |
Energy contribution | -22.50 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.39 |
Mean z-score | -2.24 |
Structure conservation index | 0.60 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1649399 120 + 23771897 CAAUGGCAUUCCUGAAGUGGACCUGGGCAUUGUGGCCAAGAUCCGCAACAUAGAGGCCACCGAGGAAGCCAAGCAGAAGCUGCUGCAGGACGCCAAGAACAAGAAGGACGGACCCUCGCA ...((((.(((((...((((.(((..(..((((((.......))))))..)..)))))))..)))))))))(((((...)))))(((((.((((...........)).))...))).)). ( -39.30) >DroVir_CAF1 13191 120 + 1 AAAUGGCAUACCCGAAGUGGAUCUGGGCAUUCAUGCCAAGAUUCACAACAUCGAGGCCACGGAGGAUGCUAAGCAAAAGCUGCUGCAGGAUGCCAAGAACAAAAAGGAUGGACCCUCACA ...((((((.(((((.((((((((.((((....)))).))))))))....)))...((.....)).(((..(((....)))...))))))))))).........(((......))).... ( -36.00) >DroPse_CAF1 12609 120 + 1 AAACGGCAUUCCUGAGGUAGACCUGGGCAUUCAGGCCAAGAUCUGCAAUAUAGAGGCCACGGAGGAUGCAAAACAGAAACUGCUGCAGGAUGCAAAGAACAAGAAGGACGGACCGUCACA .....((((.((((.(((((..(((.((((((.((((....((((.....)))))))).....))))))....)))...))))).)))))))).............((((...))))... ( -36.10) >DroGri_CAF1 13420 120 + 1 AAAUGGCAUACCAGAAGUAGAUCUGGGCAUCCAUGCUAAGAUACGUAACAUUGAGGCAACGGAGGAUGCCAAGCAGAAGCUGCUCCAGGAUGCCAAGAACAAGAAGGAUGGACCCUCGCA ...((((((.((.(.(((((.(((((((((((.(((........))).......(....)...)))))))...))))..))))).).)))))))).......((.((......))))... ( -37.00) >DroWil_CAF1 13760 120 + 1 UAAUGGUAUUCCAGAAGUUGAUUUGGGCAUCCAGGCCAAAAUACGUAAUAUUGAGGCCACCGAGGAUGCCAAGCAAAAACUAUUGCAAGAUGCCAAGAACAAAAAGGAUGGACCAUCUCA ...(((((((.(((.((((......(((((((.((((..((((.....))))..)))).....))))))).......)))).)))...)))))))..........(((((...))))).. ( -33.22) >DroMoj_CAF1 13446 120 + 1 CAAUGGCAUACCCGAAGUGGACCUUGGCAUCCAGGCCAAGAUACACAACAUUGAAGCAACGGAAGAAGCUAAGCAAAAGCUGCUACAGGAUGCUAAGAACAAAAAGGAUGGGCCCUCACA ....(((.((.((....((...((((((((((......................(((..(....)..))).((((.....))))...))))))))))..))....)).)).)))...... ( -33.50) >consensus AAAUGGCAUACCAGAAGUGGACCUGGGCAUCCAGGCCAAGAUACGCAACAUUGAGGCCACGGAGGAUGCCAAGCAAAAGCUGCUGCAGGAUGCCAAGAACAAAAAGGAUGGACCCUCACA ...((((((.((.(.(((((..((((((((((.((((..(((.......)))..)))).....)))))))...)))...))))).).))))))))..........((.....))...... (-21.36 = -22.50 + 1.14)
Location | 1,649,399 – 1,649,519 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.67 |
Mean single sequence MFE | -36.99 |
Consensus MFE | -23.44 |
Energy contribution | -23.14 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.35 |
Mean z-score | -1.95 |
Structure conservation index | 0.63 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1649399 120 - 23771897 UGCGAGGGUCCGUCCUUCUUGUUCUUGGCGUCCUGCAGCAGCUUCUGCUUGGCUUCCUCGGUGGCCUCUAUGUUGCGGAUCUUGGCCACAAUGCCCAGGUCCACUUCAGGAAUGCCAUUG ...(((((.....))))).......(((((((((((((((((....))..((((.(....).))))....))))))((((((.(((......))).)))))).....))).))))))... ( -47.10) >DroVir_CAF1 13191 120 - 1 UGUGAGGGUCCAUCCUUUUUGUUCUUGGCAUCCUGCAGCAGCUUUUGCUUAGCAUCCUCCGUGGCCUCGAUGUUGUGAAUCUUGGCAUGAAUGCCCAGAUCCACUUCGGGUAUGCCAUUU (((.((((((((.............))).))))))))(((((....)))..)).......((((((((((....(((.((((.((((....)))).)))).))).)))))...))))).. ( -36.52) >DroPse_CAF1 12609 120 - 1 UGUGACGGUCCGUCCUUCUUGUUCUUUGCAUCCUGCAGCAGUUUCUGUUUUGCAUCCUCCGUGGCCUCUAUAUUGCAGAUCUUGGCCUGAAUGCCCAGGUCUACCUCAGGAAUGCCGUUU ...((((((...((((................(((((((((........))))..((.....)).........))))).....((((((......))))))......))))..)))))). ( -31.50) >DroGri_CAF1 13420 120 - 1 UGCGAGGGUCCAUCCUUCUUGUUCUUGGCAUCCUGGAGCAGCUUCUGCUUGGCAUCCUCCGUUGCCUCAAUGUUACGUAUCUUAGCAUGGAUGCCCAGAUCUACUUCUGGUAUGCCAUUU ...(((((.....))))).......((((((((.((((.((..((((...(((((((..(((((...)))))....((......))..))))))))))).)).)))).)).))))))... ( -39.60) >DroWil_CAF1 13760 120 - 1 UGAGAUGGUCCAUCCUUUUUGUUCUUGGCAUCUUGCAAUAGUUUUUGCUUGGCAUCCUCGGUGGCCUCAAUAUUACGUAUUUUGGCCUGGAUGCCCAAAUCAACUUCUGGAAUACCAUUA ...((((((...(((.....(((.(((.......((((......))))..(((((((.....((((..(((((...)))))..)))).))))))))))...)))....)))..)))))). ( -34.40) >DroMoj_CAF1 13446 120 - 1 UGUGAGGGCCCAUCCUUUUUGUUCUUAGCAUCCUGUAGCAGCUUUUGCUUAGCUUCUUCCGUUGCUUCAAUGUUGUGUAUCUUGGCCUGGAUGCCAAGGUCCACUUCGGGUAUGCCAUUG ......(((..((((...........(((((..((.((((((....((...)).......)))))).)))))))(((.((((((((......)))))))).)))...))))..))).... ( -32.80) >consensus UGUGAGGGUCCAUCCUUCUUGUUCUUGGCAUCCUGCAGCAGCUUCUGCUUGGCAUCCUCCGUGGCCUCAAUGUUGCGUAUCUUGGCCUGAAUGCCCAGAUCCACUUCAGGAAUGCCAUUU ...(((((.....))))).......((((((((((..(((((........(((..(....)..))).....)))))..((((.(((......))).))))......)))).))))))... (-23.44 = -23.14 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:41 2006