Locus 5737

Sequence ID 3L_DroMel_CAF1
Location 15,610,540 – 15,610,657
Length 117
Max. P 0.533121
window9092

overview

Window 2

Location 15,610,540 – 15,610,657
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 89.03
Mean single sequence MFE -28.20
Consensus MFE -21.25
Energy contribution -20.88
Covariance contribution -0.38
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.75
SVM decision value -0.00
SVM RNA-class probability 0.533121
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15610540 117 + 23771897
AAAAAUAAAAAGUUUCAUAAAACAUUUGUGAUUUUGUGCAAUUUUUAUGGCUCUCGACUUUAAGUUGCCCGUGUGGGCCAAAAGUGGAGUAAGGAACAGGGGCAUUAACUAGCCAAC
.......(((((((.(((((((((....)).))))))).))))))).(((((...(((.....)))((((.(((...((.............)).))).)))).......))))).. ( -28.32)
>DroSec_CAF1 33646 117 + 1
AAAAAUAAAAAGUUUCAUAAAACAUUUGUGACUUUGCGCAAUUUUUAUGGCUCUCGACUUUAAGUUGCCCGUGUGGGCCACAAGUGGAGUAAGGAACGGGGGCAUUAACUAGGCAAC
..........((((.(((((((...(((((......))))).)))))))(((((((((((((.((.((((....)))).))...))))))......)))))))...))))....... ( -30.10)
>DroEre_CAF1 33736 106 + 1
AAAAAUAAAAAGUUUCAUAAAACAUUUGUGACUUUGCGCAAUUUUUAUGGCUUUCAACUUAAAGUUGCCCGUGUGGGCCAAGA-----------AACAGGGGCCUUAACUAGGCAAC
.........(((((((((((((...(((((......))))).)))))))).....)))))...((((((.((..(((((....-----------......)))))..))..)))))) ( -25.80)
>DroYak_CAF1 35943 117 + 1
AAAAAUAAAAAGUUUCAUAAAACAUUUGUGACUCUGCGCAAUUUUUAUGGCUUUCAACUUUAAGUUGCCCGUGUGGGGCAAAAGUGGAGUGGAGAACAGGGGCAUUAACUAGGCAAC
...........((..(((((((...(((((......))))).)))))).(.((((.((((((..((((((.....))))))...)))))).)))).).)..)).............. ( -28.60)
>consensus
AAAAAUAAAAAGUUUCAUAAAACAUUUGUGACUUUGCGCAAUUUUUAUGGCUCUCAACUUUAAGUUGCCCGUGUGGGCCAAAAGUGGAGUAAGGAACAGGGGCAUUAACUAGGCAAC
........((((((((((((((...(((((......))))).)))))))).....)))))).((((((((.(((.....................))).))))...))))....... (-21.25 = -20.88 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:16 2006