Locus 5736

Sequence ID 3L_DroMel_CAF1
Location 15,610,221 – 15,610,340
Length 119
Max. P 0.972988
window9091

overview

Window 1

Location 15,610,221 – 15,610,340
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -43.16
Consensus MFE -37.68
Energy contribution -38.72
Covariance contribution 1.04
Combinations/Pair 1.03
Mean z-score -1.80
Structure conservation index 0.87
SVM decision value 1.70
SVM RNA-class probability 0.972988
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15610221 119 + 23771897
UAUUAUACGCCGGGGCUUUUGCCGCAUCAGCUGGGACCCCA-AGUGGGUGGUUGGGCGGAAAAGUGGGGAUCUGCACUCACAGCCCCGUAUUGUCGAUACAUAAGCAAUUGGUAUGUACA
...((((..((((((((....((((.((((((...((((..-...))))))))))))))....(((((........)))))))))))(((((...)))))..........))..)))).. ( -43.90)
>DroSec_CAF1 33334 120 + 1
UAUUAUACGCCGGGGCUUUUGCCGCAUCAGCUGGGACCCCAAAGUGGGUGGUUGGGCGGAAAAGUGGGUAUCUGCACACACAGCCCCUUAUUGUCGAUACAUAAGCAAUUGGUAUGUACA
...((((..((((((((....((((.((((((...((((......))))))))))))))....(((.((....)).)))..))))))..(((((..........))))).))..)))).. ( -38.60)
>DroSim_CAF1 33340 120 + 1
UAUUAUACGCCGGGGCUUUUGCCGCAUCAGCUGGGACCCCAAAGUGGGUGGUUAGGCGAAAAAGUGGGUAUCUGCACUCACAGCCCCGUAUUGUCGAUACAUAAGCAAUUGGUAUGUACA
...((((..((((((((((((((((....))...((((((......)).)))).)))))))..((((((......)))))).)))))(((((...)))))..........))..)))).. ( -42.20)
>DroEre_CAF1 33428 117 + 1
UAUUAUACGCCGGGGCUUUUCCCGCAUCAGCUGGGACCCC--AGUGGGUGGUGGGGUGGAAAAGUGG-GGUCUGCACUCACAGCCCCGUAUUGUCGAUACAUAAGCAAUUGGUAUGUACA
...((((..((((((((..(((((((((.(((((....))--))).))).)))))).......((((-(.......)))))))))))(((((...)))))..........))..)))).. ( -46.00)
>DroYak_CAF1 35635 118 + 1
UAUUAUACGCCGGGGCUUUUGCCGCAUCAGCUGGGACCCC--AGUGGGUGGUUGGGCGGAAAAGUGGGGGUCUGCACUCACAGCCCCGUAUUGUCGAUACAUAAGCAAUUGGUAUGUACA
...((((..((((((((((((((.((((.(((((....))--))).))))....)))))))..(((((........))))).)))))(((((...)))))..........))..)))).. ( -45.10)
>consensus
UAUUAUACGCCGGGGCUUUUGCCGCAUCAGCUGGGACCCCA_AGUGGGUGGUUGGGCGGAAAAGUGGGGAUCUGCACUCACAGCCCCGUAUUGUCGAUACAUAAGCAAUUGGUAUGUACA
...((((..(((((((((((.((((.((((((...((((......)))))))))))))).)))(((((........)))))))))))(((((...)))))..........))..)))).. (-37.68 = -38.72 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:15 2006