Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,608,423 – 15,608,572 |
Length | 149 |
Max. P | 0.969090 |
Location | 15,608,423 – 15,608,543 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.92 |
Mean single sequence MFE | -15.00 |
Consensus MFE | -12.50 |
Energy contribution | -12.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.83 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.855184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15608423 120 + 23771897 ACAGUAAGACCAAUGCAAUUUGCAAUUACUCUAUAAUUAUACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAAUCACCCCUCGAUAAAACAA .............((((((((((((((............................................)))))))))))).))((.......))....................... ( -12.50) >DroSec_CAF1 31664 119 + 1 ACAGUGAGACCAAUGCAAUUUGCAAUUACUCUAUAAUUAUACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGA-CCACCCCUCGAUAAAACAA ....((((.....((((((((((((((............................................)))))))))))).))((.......))...-......))))......... ( -15.70) >DroSim_CAF1 31686 120 + 1 GCAGUAAGACCAAUGCAAUUUGCAAUUAAUCUAUAAUUAUACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAACCACCCCUCGAUAAAACAA (((..(((.....((((((((((((((............................................)))))))))))).)).)))....)))....................... ( -14.90) >DroEre_CAF1 31555 120 + 1 ACAGUAAGGCCAAUGCAAUUUGCAAUUACUCCAUAAUUAUACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAACCACCCCUCGAUAAAACAA .......((....((((((((((((((............................................)))))))))))).))((.......))....))................. ( -14.00) >DroYak_CAF1 33811 120 + 1 ACAGUAAGGCCAAUGCAAUUUGCAAUUACUCGAUAAUUAUACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGGACCACCCCUCGAUAAAACAA .......((((..((((((((((((((............................................)))))))))))).))((.......)).)).))................. ( -17.90) >consensus ACAGUAAGACCAAUGCAAUUUGCAAUUACUCUAUAAUUAUACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAACCACCCCUCGAUAAAACAA .............((((((((((((((............................................)))))))))))).))((.......))....................... (-12.50 = -12.50 + 0.00)
Location | 15,608,463 – 15,608,572 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.29 |
Mean single sequence MFE | -19.16 |
Consensus MFE | -13.30 |
Energy contribution | -13.30 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.71 |
Structure conservation index | 0.69 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15608463 109 + 23771897 ACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAAUCACCCCUCGAUAAAACAAAUGCAAUUGACCUGCAUUUCAAAUUG-----------CAC .........((((((..................(((((..((((.....)))).)))))...................(((((((.......)))))))..)))))-----------).. ( -16.10) >DroSec_CAF1 31704 108 + 1 ACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGA-CCACCCCUCGAUAAAACAAAUGCAAUUGACCUGCAUUUCAAAUUG-----------CGC .........((((((..................(((((..((((.....)))).))))).-.................(((((((.......)))))))..)))))-----------).. ( -16.10) >DroSim_CAF1 31726 109 + 1 ACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAACCACCCCUCGAUAAAACAAAUGCAAUUGACCUGCAUUUCAAAUUG-----------CAC .........((((((..................(((((..((((.....)))).)))))...................(((((((.......)))))))..)))))-----------).. ( -16.10) >DroEre_CAF1 31595 120 + 1 ACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAACCACCCCUCGAUAAAACAAAUGCAGUUGACCUGCAUUUCAAAUUGCAGGUGCCGAGCAC .........((((((..(((......)))..)))))).........(((((((.((((.......................)))).)))(((((((........)))))))...)))).. ( -23.70) >DroYak_CAF1 33851 120 + 1 ACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGGACCACCCCUCGAUAAAACAAAUGCAAUUGACCUGCAUUUCAAAUGGCAGGUGCCGAGCAC .........((((((..(((......)))..)))))).........((((.(((((((((........(((((............)))))))))))))).....(((....))))))).. ( -23.80) >consensus ACAACAAAAGCAAUUAAAUUCAACUUAAUCAAAUUGCAAAUUGACAGCUUCAAAUGCAGAACCACCCCUCGAUAAAACAAAUGCAAUUGACCUGCAUUUCAAAUUG___________CAC .........((((((..(((......)))..))))))...((((..((.((((.((((.......................)))).))))...))...)))).................. (-13.30 = -13.30 + -0.00)
Location | 15,608,463 – 15,608,572 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.29 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -24.42 |
Energy contribution | -24.34 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.78 |
Structure conservation index | 0.86 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15608463 109 - 23771897 GUG-----------CAAUUUGAAAUGCAGGUCAAUUGCAUUUGUUUUAUCGAGGGGUGAUUCUGCAUUUGAAGCUGUCAAUUUGCAAUUUGAUUAAGUUGAAUUUAAUUGCUUUUGUUGU ..(-----------((.(((.(((((((((...((..(.((((......))))..)..))))))))))).))).)))((((..((((((.((((......)))).))))))....)))). ( -25.70) >DroSec_CAF1 31704 108 - 1 GCG-----------CAAUUUGAAAUGCAGGUCAAUUGCAUUUGUUUUAUCGAGGGGUGG-UCUGCAUUUGAAGCUGUCAAUUUGCAAUUUGAUUAAGUUGAAUUUAAUUGCUUUUGUUGU ..(-----------((.(((.((((((((..((......((((......))))...)).-.)))))))).))).)))((((..((((((.((((......)))).))))))....)))). ( -27.80) >DroSim_CAF1 31726 109 - 1 GUG-----------CAAUUUGAAAUGCAGGUCAAUUGCAUUUGUUUUAUCGAGGGGUGGUUCUGCAUUUGAAGCUGUCAAUUUGCAAUUUGAUUAAGUUGAAUUUAAUUGCUUUUGUUGU ..(-----------((.(((.(((((((((...((..(.((((......))))..)..))))))))))).))).)))((((..((((((.((((......)))).))))))....)))). ( -26.00) >DroEre_CAF1 31595 120 - 1 GUGCUCGGCACCUGCAAUUUGAAAUGCAGGUCAACUGCAUUUGUUUUAUCGAGGGGUGGUUCUGCAUUUGAAGCUGUCAAUUUGCAAUUUGAUUAAGUUGAAUUUAAUUGCUUUUGUUGU .....((((.((((((........))))))((((.((((...(..(((((....)))))..))))).)))).)))).((((..((((((.((((......)))).))))))....)))). ( -30.20) >DroYak_CAF1 33851 120 - 1 GUGCUCGGCACCUGCCAUUUGAAAUGCAGGUCAAUUGCAUUUGUUUUAUCGAGGGGUGGUCCUGCAUUUGAAGCUGUCAAUUUGCAAUUUGAUUAAGUUGAAUUUAAUUGCUUUUGUUGU ..((..(((....)))..((.(((((((((...((..(.((((......))))..)..))))))))))).))))...((((..((((((.((((......)))).))))))....)))). ( -31.80) >consensus GUG___________CAAUUUGAAAUGCAGGUCAAUUGCAUUUGUUUUAUCGAGGGGUGGUUCUGCAUUUGAAGCUGUCAAUUUGCAAUUUGAUUAAGUUGAAUUUAAUUGCUUUUGUUGU ..............((.(((.(((((((((...((..(.((((......))))..)..))))))))))).))).)).((((..((((((.((((......)))).))))))....)))). (-24.42 = -24.34 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:08 2006