| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,606,559 – 15,606,658 |
| Length | 99 |
| Max. P | 0.696205 |
| Location | 15,606,559 – 15,606,658 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 94.28 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -24.49 |
| Energy contribution | -23.83 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15606559 99 - 23771897 GCACACAGAUACACACGCAGACAUAUCAGUCAAGCUGUCUUGCUUUCUGUUUGGCAAAAGGUACUUGUGUGCGUGCAAUUGAAGAAAUAUUCAUACGUU ((((((((.(((....((.(((......)))..))((((..((.....))..))))....))).))))))))(((....((((......)))))))... ( -25.30) >DroSec_CAF1 29693 99 - 1 GCACACAGAUACACACACAGACAUAUCAGUCAAGCUGUCUUGCUUUCUGUUUGACAAAAGGUACUUGUGUGCGUAAAAGGGAAGAAAUAUUCAUGCGUU ((((((((.(((.......(((......)))....((((..((.....))..))))....))).))))))))(((.....(((......))).)))... ( -24.50) >DroSim_CAF1 29651 99 - 1 GCACACAGAUACACACGCAGACAUAUCAGUCAAGCUGUCUUGCUUUCUGUUUGACAAAAGGUACUUGUGUGCGUAAGAAGGAAGAAAUAUUCAUGCGUU ((((((((.(((....((.(((......)))..))((((..((.....))..))))....))).))))))))(((.(((..........))).)))... ( -26.50) >consensus GCACACAGAUACACACGCAGACAUAUCAGUCAAGCUGUCUUGCUUUCUGUUUGACAAAAGGUACUUGUGUGCGUAAAAAGGAAGAAAUAUUCAUGCGUU ((((((((.(((.......(((......)))....((((..((.....))..))))....))).))))))))(((.....(((......))).)))... (-24.49 = -23.83 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:01 2006