Locus 5725

Sequence ID 3L_DroMel_CAF1
Location 15,602,446 – 15,602,543
Length 97
Max. P 0.988646
window9066

overview

Window 6

Location 15,602,446 – 15,602,543
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.81
Mean single sequence MFE -14.94
Consensus MFE -7.22
Energy contribution -8.42
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.48
SVM decision value 2.13
SVM RNA-class probability 0.988646
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15602446 97 + 23771897
-----------------------ACUACCGAUCUAAUUAGACUACUUAGGACAGGAAACUCCCCAAAUUAGGACAGGAAACUCACCACAAAUGACCAAUUAUUGAAAAAAAAAAAACAAA
-----------------------.....((((................((..((....))..))......((..((....))..))..............))))................ ( -10.10)
>DroSec_CAF1 25520 86 + 1
----------------------------UGAUCUAAUUAGACUACUUAGGACAGGAAACUCCCCAAAUUAGGACA---AACUCACCACAGAUGACUAAUUAGUCCCAAA---AAACCAAA
----------------------------.((.((((((((.(((.((.((..((....))..)).)).)))....---...(((.......))))))))))))).....---........ ( -13.80)
>DroSim_CAF1 25420 87 + 1
----------------------------UGAUCUAAUUAGACUACUUAGGACAGGAAACUCCCCAAAUUAGGACA---AACUCACCACAAAUGGCUAAUUAGUCCCAAA--AAAACCAAA
----------------------------.((.((((((((.(((.((.((..((....))..)).)).)))....---......(((....))))))))))))).....--......... ( -15.50)
>DroEre_CAF1 25567 88 + 1
-------------------GCUAACUUCCGAUCCAAUUAGACCCCUUAAAACAGGAAACUCCCCAAAUGAGGACA---AACUCACCA-------CUAAUUAGAUACAAA---AAACAGAA
-------------------...........(((.((((((............((....)).......((((....---..))))...-------)))))).))).....---........ ( -12.00)
>DroYak_CAF1 27461 114 + 1
ACUAAGGGUUGUGGUGCUCGCUAACUUCCGAUCUAAUUAGACGCAUUGGGACAGGAAACUCCCCAAAUUAGGACA---AACUCACCACAAACGACUAAAUAGAUAAAAA---AAACAGAA
.....(((...((((....))))...))).(((((.((((.((..(((((..((....)).)))))....((...---......)).....)).)))).))))).....---........ ( -23.30)
>consensus
_______________________ACU_CCGAUCUAAUUAGACUACUUAGGACAGGAAACUCCCCAAAUUAGGACA___AACUCACCACAAAUGACUAAUUAGUCACAAA___AAACCAAA
................................((((((((........((..((....))..))......((............))........)))))))).................. ( -7.22 =  -8.42 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:50 2006