Locus 5724

Sequence ID 3L_DroMel_CAF1
Location 15,601,206 – 15,601,326
Length 120
Max. P 0.996941
window9065

overview

Window 5

Location 15,601,206 – 15,601,326
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -28.94
Consensus MFE -25.74
Energy contribution -25.34
Covariance contribution -0.40
Combinations/Pair 1.06
Mean z-score -2.26
Structure conservation index 0.89
SVM decision value 2.77
SVM RNA-class probability 0.996941
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15601206 120 + 23771897
AAUUUCAAUUAUGUUGUGCUUUAAUGCAAUUGCAUAAUUCCAACUGCAGAAGUUGCUUUGUCUGUGUGCUUAGUGGAAGUAAUUUUUCCUGUGUUUGCGGUUAACUAUUUGUAAAUCACA
......((((((((..(((......)))...))))))))......(.((((((((((((..(((......)))..)))))))))))).).((((((((((........))))))).))). ( -28.00)
>DroSec_CAF1 24264 120 + 1
AAUUUAAAUUAUGUUGUGCUUUAAUGCAAUUGCAUAAUUCCAAAUGCAGAAGUUGCUUUGUCUGUGUGCUUAGUGGAAGUAAUUUUUCCUGUGUUUGCGGUUAACUAUUUGUAAAUCACA
......((((((((..(((......)))...)))))))).(((((((((((((((((((..(((......)))..))))))))))...))))))))).((((.((.....)).))))... ( -30.30)
>DroSim_CAF1 24165 120 + 1
AAUUUCAAUUAUGUUGUGCUUUAAUGCAAUUGCAUAAUUCCAAAUGCAGAAGUUGCUUUGUCUGUGUGCUUAGUGGAAGUAAUUUUUCCUGUGUUUGCGGUUAACUAUUUGUAAAUCACA
......((((((((..(((......)))...)))))))).(((((((((((((((((((..(((......)))..))))))))))...))))))))).((((.((.....)).))))... ( -30.30)
>DroEre_CAF1 24384 119 + 1
AAUUUCAAUUAUGUUGUGCUUUAAUGCAAUUGCAUAAUUGCAGUUUCAGAAGUUGUUUUG-CUGUGUGCUUAGUGGAAGUAAUUUUUCCUGUGUUUGCGGUUAACUAUUUGUAAAUCACA
((((.(((((((((..(((......)))...))))))))).))))..(((((((((((..-(((......)))..))).))))))))...((((((((((........))))))).))). ( -29.80)
>DroYak_CAF1 25907 120 + 1
AAUUUCAAUUAUGUUGUGCUUUAAUGCAAUUGCAUAAUUCCAAUUUCAGGAGUUGUUUUGUCUGUGUGCUUAGUGGAAGUAAUUUUUCCUGUGUUUGCGGUUAACUAUUUGUAAAUCACA
......((((((((..(((......)))...))))))))........(((((..(((...((..(.......)..))...)))..)))))((((((((((........))))))).))). ( -26.30)
>consensus
AAUUUCAAUUAUGUUGUGCUUUAAUGCAAUUGCAUAAUUCCAAAUGCAGAAGUUGCUUUGUCUGUGUGCUUAGUGGAAGUAAUUUUUCCUGUGUUUGCGGUUAACUAUUUGUAAAUCACA
......((((((((..(((......)))...))))))))........((((((((((((..(((......)))..))))))))))))...((((((((((........))))))).))). (-25.74 = -25.34 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:49 2006