Locus 5722

Sequence ID 3L_DroMel_CAF1
Location 15,600,216 – 15,600,329
Length 113
Max. P 0.564000
window9059

overview

Window 9

Location 15,600,216 – 15,600,329
Length 113
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 91.17
Mean single sequence MFE -27.24
Consensus MFE -21.72
Energy contribution -22.83
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -2.11
Structure conservation index 0.80
SVM decision value 0.06
SVM RNA-class probability 0.564000
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15600216 113 + 23771897
AAUAUGGAAAUAAAUAUUUAAUUCAUAUUUUUCUACGUGCAGUU----AGUCUGCUGAGGGAACUAAAACUAGCAAAUCAGUAAUCAUUACGAGUCGAUUGCAGCAAUUGACUCGGC
((((((((.............))))))))(((((.((.((((..----...)))))).)))))...........................(((((((((((...))))))))))).. ( -24.92)
>DroSec_CAF1 23267 117 + 1
AAUAUUCGAAUGAAAAUUUAAUUCAUAUUUUUCUAGGUGCACUUAGUCAGUCUGCUGAGAGAACUAAAACUAGCAAAUCAGUAAUCAUAACGAGUCGAUUGCAGCAAUUGACUCGGC
.......(((((((.......)))))......(((((....))))))).(..((((((.....(((....)))....))))))..)....(((((((((((...))))))))))).. ( -26.00)
>DroSim_CAF1 23182 117 + 1
AAUAUGCGAAUGGAAAUUUAAUUCAUAUUUUUCUAGGUGCACUUAGUAAGUCUGCUGAGAAAACUAAAACUAGCAAAUCAGUAAUCAUAACGAGUCGAUUGCAGCAAUUGACUCGGC
....((((..((((((..((.....))..))))))..))))........(..((((((.....(((....)))....))))))..)....(((((((((((...))))))))))).. ( -30.80)
>consensus
AAUAUGCGAAUGAAAAUUUAAUUCAUAUUUUUCUAGGUGCACUUAGU_AGUCUGCUGAGAGAACUAAAACUAGCAAAUCAGUAAUCAUAACGAGUCGAUUGCAGCAAUUGACUCGGC
((((((.((((....))))....)))))).........((.........(..((((((.....(((....)))....))))))..)....(((((((((((...))))))))))))) (-21.72 = -22.83 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:43 2006