Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,599,683 – 15,599,803 |
Length | 120 |
Max. P | 0.991459 |
Location | 15,599,683 – 15,599,803 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.83 |
Mean single sequence MFE | -34.90 |
Consensus MFE | -32.90 |
Energy contribution | -33.10 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.94 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15599683 120 + 23771897 UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUAUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU ...((((.(((.....((((((........))))))(((.(((((((((((........))).)))))))).)))...))).)))).....(((((......)))))............. ( -33.40) >DroSec_CAF1 22904 119 + 1 UUGCAAUUAUAGCCACGUUAACAGCGAAAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUGUUGAA-AAGCCAGCGACUCUUGGCAAACAAACCGAAU ...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((..-....))))))....))))............. ( -35.50) >DroSim_CAF1 22647 120 + 1 UUGCAAUUAUAGCCACGUUAACAGCGAAAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUGUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU ...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((.......))))))....))))............. ( -35.00) >DroEre_CAF1 22906 120 + 1 UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGUCGCGGUGACAGCGCUACGUCGACUGCGACCGCAAAAUAUCGUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU ...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((.......))))))....))))............. ( -37.10) >DroYak_CAF1 24338 120 + 1 UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGCCGCGGAGACAGCGCUACGUCGACUGCGACCGCAAAAUAUCGUUGAAAAAGCCAGCGGCUCUUGGCAAACAAACCGAAU ...........((((.((((((........)))))).(((((.(((....).))(((...((((((((....))).......)))))...)))..)))))...))))............. ( -33.51) >consensus UUGCAAUUAUAGCCACGUUAACAGCGAGAAGUUAACUGCCGUCGCGGUGACAGCGCGACGUCGACUGCGACCGCAAAAUAUUGUUGAAAAAGCCAGCGACUCUUGGCAAACAAACCGAAU ...........((((.((((((........))))))(((.(((((((((((........))).)))))))).))).....((((((.......))))))....))))............. (-32.90 = -33.10 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:42 2006