Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,597,457 – 15,597,657 |
Length | 200 |
Max. P | 0.994916 |
Location | 15,597,457 – 15,597,577 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -45.68 |
Consensus MFE | -45.41 |
Energy contribution | -45.41 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.99 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15597457 120 + 23771897 CGAAUCCAAGCCCAAGGCCAGCUGCUCCAGUUUGUUAAUGAGUAUGGAGUAGUUGCCGGGCAGAUCGAAGCCGCCAAGAUCGAGUUUUUCGCCACUACUGGUGGAUGCUGCGGCAUCCAA (((.((...((((..(((.((((((((((...............))))))))))))))))).)))))..(((((........(((..(((((((....))))))).))))))))...... ( -45.66) >DroSec_CAF1 20717 120 + 1 CGAAUCCAAGCCCAAGGCCAGCUGCUCCAGUUUGUUAAUGAGUAUGGAGUAGUUGCCGGGCAGAUCGAAGCCGCCAAGAUCGAGUUUUUCGCCACUACUGGUGGAUGCUGCGGCAUCCAA (((.((...((((..(((.((((((((((...............))))))))))))))))).)))))..(((((........(((..(((((((....))))))).))))))))...... ( -45.66) >DroEre_CAF1 20713 120 + 1 CGAGUCCAAGCCCAGGGCCAGCUGCUCCAGUUUGUUAAUGAGUAUGGAGUAGUUGCCGGGCAGAUCGAAGCCGCCCAGAUCGAGUUUUUCGCCACUAUUGGUGGAUGCUGCGGCGUCCAA (((.((...((((..(((.((((((((((...............))))))))))))))))).)))))..(((((........(((..(((((((....))))))).))))))))...... ( -45.66) >DroYak_CAF1 22111 120 + 1 CGAGUCCAAGCCCAAGGCCAGCUGCUCCAGUUUGUUAAUGAGUAUGGAGUAGUUGCCGGGCAGAUCGAAGCCGCCCAGAUCGAGUUUUUCGCCACUAUUGGUGGACGCUGCGGCGUCCAA .....((((((((..(((.((((((((((...............))))))))))))))))).((((...........))))................))))(((((((....))))))). ( -45.76) >consensus CGAAUCCAAGCCCAAGGCCAGCUGCUCCAGUUUGUUAAUGAGUAUGGAGUAGUUGCCGGGCAGAUCGAAGCCGCCAAGAUCGAGUUUUUCGCCACUACUGGUGGAUGCUGCGGCAUCCAA (((.((...((((..(((.((((((((((...............))))))))))))))))).)))))..(((((........(((..(((((((....))))))).))))))))...... (-45.41 = -45.41 + 0.00)
Location | 15,597,537 – 15,597,657 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.03 |
Mean single sequence MFE | -45.35 |
Consensus MFE | -45.55 |
Energy contribution | -44.67 |
Covariance contribution | -0.87 |
Combinations/Pair | 1.14 |
Mean z-score | -2.48 |
Structure conservation index | 1.00 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15597537 120 + 23771897 CGAGUUUUUCGCCACUACUGGUGGAUGCUGCGGCAUCCAAGGUCGUUGCAUUGCCAUUAAGGCCUUCACUUAAAGUUGUGGUUGUGGCAGUUGCAAUCGUUAGAUUGCCGGCAUCUUCGA ((((......((.((.(((..(((((((....))))))).))).)).))..((((......(((.((((........))))....)))....((((((....)))))).))))..)))). ( -42.30) >DroSec_CAF1 20797 120 + 1 CGAGUUUUUCGCCACUACUGGUGGAUGCUGCGGCAUCCAAGGUCGUUGCAUUGCCAUUGAGACCUUCGCUUAAAGUUGUGGUUGUGGCAGUUGCAAUCGUUAGAUUGCCGGCAUCUUCGA ((((.....(((((....)))))(((((..(((((((.((.(..(((((((((((((...((((...((.....))...))))))))))).))))))).)).)).)))))))))))))). ( -42.80) >DroEre_CAF1 20793 120 + 1 CGAGUUUUUCGCCACUAUUGGUGGAUGCUGCGGCGUCCAAGGUCGUCGCAUUGCCAUUAAGGCCUUCACUUAAAGUUGUGGCUGUGGCAGUUGCAAUCGUCAGAUUGCCGGCAUCUUCGA ((((.....(((((....)))))((((((((((((.(....).))))))((((((((...((((...((.....))...)))))))))))).((((((....)))))).)))))))))). ( -49.50) >DroYak_CAF1 22191 120 + 1 CGAGUUUUUCGCCACUAUUGGUGGACGCUGCGGCGUCCAAGGUCGUCGCAUUGCCAUUGAGGCCUUCACUUAGAGUUGUGGUUGUGGCAGUUGCAAUCGUUAGAUUGCUGGUGUCUUCGA ((((.....(((((....)))))((((((((((((.(....).))))))((((((((...((((...((.....))...)))))))))))).((((((....)))))).)))))))))). ( -46.80) >consensus CGAGUUUUUCGCCACUACUGGUGGAUGCUGCGGCAUCCAAGGUCGUCGCAUUGCCAUUAAGGCCUUCACUUAAAGUUGUGGUUGUGGCAGUUGCAAUCGUUAGAUUGCCGGCAUCUUCGA ((((.....(((((....)))))((((((((((((.(....).))))))((((((((...((((...((.....))...)))))))))))).((((((....)))))).)))))))))). (-45.55 = -44.67 + -0.87)
Location | 15,597,537 – 15,597,657 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.03 |
Mean single sequence MFE | -36.05 |
Consensus MFE | -34.95 |
Energy contribution | -34.58 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.11 |
Mean z-score | -2.14 |
Structure conservation index | 0.97 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15597537 120 - 23771897 UCGAAGAUGCCGGCAAUCUAACGAUUGCAACUGCCACAACCACAACUUUAAGUGAAGGCCUUAAUGGCAAUGCAACGACCUUGGAUGCCGCAGCAUCCACCAGUAGUGGCGAAAAACUCG .(((........((((((....))))))...((((((.(((((........)))...(((.....))).............(((((((....)))))))...)).))))))......))) ( -36.40) >DroSec_CAF1 20797 120 - 1 UCGAAGAUGCCGGCAAUCUAACGAUUGCAACUGCCACAACCACAACUUUAAGCGAAGGUCUCAAUGGCAAUGCAACGACCUUGGAUGCCGCAGCAUCCACCAGUAGUGGCGAAAAACUCG .(((........((((((....))))))...((((((.((..............((((((......((...))...))))))((((((....))))))....)).))))))......))) ( -36.20) >DroEre_CAF1 20793 120 - 1 UCGAAGAUGCCGGCAAUCUGACGAUUGCAACUGCCACAGCCACAACUUUAAGUGAAGGCCUUAAUGGCAAUGCGACGACCUUGGACGCCGCAGCAUCCACCAAUAGUGGCGAAAAACUCG (((..(((((..((((((....))))))...(((((..(((...((.....))...))).....))))).((((.((.(....).)).)))))))))(((.....))).)))........ ( -33.80) >DroYak_CAF1 22191 120 - 1 UCGAAGACACCAGCAAUCUAACGAUUGCAACUGCCACAACCACAACUCUAAGUGAAGGCCUCAAUGGCAAUGCGACGACCUUGGACGCCGCAGCGUCCACCAAUAGUGGCGAAAAACUCG .(((........((((((....))))))...((((((...(((........)))...(((.....))).............(((((((....)))))))......))))))......))) ( -37.80) >consensus UCGAAGAUGCCGGCAAUCUAACGAUUGCAACUGCCACAACCACAACUUUAAGUGAAGGCCUCAAUGGCAAUGCAACGACCUUGGACGCCGCAGCAUCCACCAAUAGUGGCGAAAAACUCG .(((........((((((....))))))...((((((..............(((...(((.....)))..)))........(((((((....)))))))......))))))......))) (-34.95 = -34.58 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:31 2006