Locus 5716

Sequence ID 3L_DroMel_CAF1
Location 15,596,698 – 15,596,818
Length 120
Max. P 0.994465
window9044

overview

Window 4

Location 15,596,698 – 15,596,818
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -28.20
Consensus MFE -24.98
Energy contribution -24.82
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.24
Structure conservation index 0.89
SVM decision value 2.48
SVM RNA-class probability 0.994465
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15596698 120 - 23771897
AAUCAAAUUGCAGAAUCAUUCGGGCUGAAUUAAACGUCAGUGGAAACUCGUUUAGACUUGGACUUUGGCGCGAAGAGCGGCGAGAGCCAAGCAAAUAAAAAACAAAAAUAGAAACCGAUA
...................((((.(((..(((((((..(((....)))))))))).(((((..((((.(((.....))).))))..))))).................)))...)))).. ( -30.70)
>DroSec_CAF1 19992 117 - 1
AAUCAAAUUGCAGAAUCAUUCGGGCUGAAUUAAACGUCAGUGGAAACUCGUUUAGACUUGGACUUUGGCGCGAAGAGCGUCGGGAGCCAAGCAAAUAAAAAACAAAAAUAGAAA---AUA
.......((((..................(((((((..(((....))))))))))..((((..((((((((.....))))))))..))))))))....................---... ( -26.40)
>DroSim_CAF1 20061 120 - 1
AAUCAAAUUGCAGAAUCAUUCGGGCUGAAUUAAACGUCAGUGGAAACUCGUUUAGACUUGGACUUUGGCGCGAAGAGCGUCGAGAGCCAAGCAAAUAAAAAACAAAAAUAGAAACCGAUA
...................((((.(((..(((((((..(((....)))))))))).(((((..((((((((.....))))))))..))))).................)))...)))).. ( -32.60)
>DroEre_CAF1 20010 120 - 1
AAUCAAAUUGCAGAAUCAUUCAGGCUGAAUUAAACGUCAGUGGAAACUCGUUUAGAAUUGGACUUUGGCGCGAAGAGCGGCGAGAGCCAAGCAAAUAAAAAACAAAAAUAGAAACCGAUA
.......((((....((((((.....))))((((((..(((....))))))))))).((((..((((.(((.....))).))))..)))))))).......................... ( -25.70)
>DroYak_CAF1 21381 120 - 1
AAUCAAAUUGCAGAAUCAUUCAGGCUGAAUUAAACGUCAGUGGAAACUCGUUUAGACUUGGACUUUGGCGCGAAGAGCGGCGAGAGCCAAGCAAAUAAAAAACAAAAAUAGAAACCGAUA
.(((........((.....)).((.....(((((((..(((....)))))))))).(((((..((((.(((.....))).))))..))))).......................))))). ( -25.60)
>consensus
AAUCAAAUUGCAGAAUCAUUCGGGCUGAAUUAAACGUCAGUGGAAACUCGUUUAGACUUGGACUUUGGCGCGAAGAGCGGCGAGAGCCAAGCAAAUAAAAAACAAAAAUAGAAACCGAUA
.......((((..................(((((((..(((....))))))))))..((((.((((.((((.....))).).)))))))))))).......................... (-24.98 = -24.82 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:28 2006