| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,596,306 – 15,596,425 |
| Length | 119 |
| Max. P | 0.723799 |
| Location | 15,596,306 – 15,596,425 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.14 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -21.00 |
| Energy contribution | -21.20 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15596306 119 - 23771897 AGUGUGUUCCAUGAGCUGCCUGUUUGCGCCUACUAUUUGCCAAAAUAAUAAUUAGAAGCCGCAGAUCAGAAGCUAAUAACACUGCAAA-AAUUAUCACAAAAUCGUGCCAUUUAAAAAUA .(((((((.....((((..(((((((((.((.(((.(((.........))).))).)).)))))).))).))))...))))).))...-......(((......)))............. ( -23.70) >DroSec_CAF1 19599 119 - 1 AGUGUGUUCCAUGAGCUGACUGUUUGCGCCUACUAUUUGCCAAAAUAAUAAUUAGAAGCCGCAGAUCAGAAGCUAAAAACACUGCAAA-AAUUAUCACGAAAUCGUGUCAGUUAUAGAUA .(((((((.....((((..(((((((((.((.(((.(((.........))).))).)).)))))).))).))))...))))).))...-((((..((((....))))..))))....... ( -27.90) >DroSim_CAF1 19667 119 - 1 AGUGUGUUCCAUGAGCUGCCUGUUUGCGCCUACUAUUUGCCAAAAUAAUAAUUAGAAGCCGCAGAUCAGAAGCUAAAAACACUGCAAAAAAUUAUCACGAAAAUGUGCCAUUUA-AAAUA .(((((((.....((((..(((((((((.((.(((.(((.........))).))).)).)))))).))).))))...))))).))..........(((......))).......-..... ( -23.30) >DroEre_CAF1 19637 113 - 1 AGUGUGUUCCAUGAGCUGCCUGUUUGCGCCUACUAUUUGCCGAAAUAAUAAUUAGAAGCCGCAGAUCAGCAGCUAGGAACACUGCGAG-AAUAUCGA------CGUGCCAUUUAUAGAUA .(((((((((...((((((..(((((((.((.(((.(((.........))).))).)).)))))))..)))))).)))))))..(((.-....))))------)................ ( -34.80) >DroYak_CAF1 21009 112 - 1 AGUGUGUUCCAUGAGCUGCCUGUUUGCGCCUACUAUUUGCCAAAAUAAUAAUUAGAAGCCGCAGAUC-GAAGCUAAAAACACUGCAAA-AAUUACCA------AGCGCCAUUUAUAGAUA .(((((((.....((((..(.(((((((.((.(((.(((.........))).))).)).))))))).-).))))...))))).))...-........------................. ( -20.50) >consensus AGUGUGUUCCAUGAGCUGCCUGUUUGCGCCUACUAUUUGCCAAAAUAAUAAUUAGAAGCCGCAGAUCAGAAGCUAAAAACACUGCAAA_AAUUAUCAC_AAA_CGUGCCAUUUAUAGAUA .(((((((.....((((..(((((((((.((.(((.(((.........))).))).)).)))))).))).))))...))))).))................................... (-21.00 = -21.20 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:27 2006