Locus 5714

Sequence ID 3L_DroMel_CAF1
Location 15,595,847 – 15,595,967
Length 120
Max. P 0.943874
window9042

overview

Window 2

Location 15,595,847 – 15,595,967
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.33
Mean single sequence MFE -32.76
Consensus MFE -30.14
Energy contribution -29.90
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -1.46
Structure conservation index 0.92
SVM decision value 1.34
SVM RNA-class probability 0.943874
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15595847 120 + 23771897
UUCUCGAAAGAUAAGGGCCCGAAACACAUUGUCUGGGGGCUGUUCUCUACCCAAUGUUUAAUCAAUGUAGUUGGAAAUUUAUUGGGCUAAUUGCUUUCUAAUUUAUUGGAGAGUGGAAAC
...((....))....(((((((...((((((..((((((....))))))..))))))....(((((...))))).......)))))))..(..((((((((....))))))))..).... ( -34.00)
>DroSec_CAF1 19124 120 + 1
UUCUCGAAAGAUAAGGGCCCGAAACACAUUGUCUGGGGGCUCUACUCUACCCAAUGUUUAAUCAAUGUAGUUGGAAAUUUAUUGGGCUAAUUGCUUUCUAAUUUAUUGGGGAGUGGAAAC
...((....))....(((((((...((((((..(((((......)))))..))))))....(((((...))))).......)))))))..(..((..((((....))))..))..).... ( -34.10)
>DroSim_CAF1 19185 120 + 1
UUCUCGAAAGAUAAGGGCCCAAAACACAUUGUCUGGGGGCUGUUCUCUACCCAAUGUUUAAUCAAUGUAGUUGGAAAUUUAUUGGGCUAAUUGCUUUCUAAUUUAUUGGGGAGUGGAAAC
...((....))....(((((((...((((((..((((((....))))))..))))))....(((((...))))).......)))))))..(..((..((((....))))..))..).... ( -33.50)
>DroEre_CAF1 19299 119 + 1
UUCUCGAAAGAUAAGGGC-CAAAACACAUUGUCUGGGGGCUGUUCUCCGCCCACUGUUUAAUCAAUGUAGUUGGAAAUUUAUUGGGCUAAUUGCUUUCUGAUUUAUUGGAGAGUGGAACC
.....(...((((((..(-(((...((((((...((((((........)))).)).......))))))..))))...))))))...)...(..(((((..(....)..)))))..).... ( -29.50)
>DroYak_CAF1 20628 120 + 1
UUCUCGAAAGAUAAGGGCCCAAAGCACAUUGUCUGGGGGCUGUUCUCCUCCCACUGUUUAAUCAUUGUAGUUGGAAAUUUAUUGGGCUAAUUGCUUUCUGAUUUAUUGGAGAGCGGAAUC
...((....))....(((((((............(((((....)))))(((.((((...........)))).)))......)))))))..((((((((..(....)..)))))))).... ( -32.70)
>consensus
UUCUCGAAAGAUAAGGGCCCAAAACACAUUGUCUGGGGGCUGUUCUCUACCCAAUGUUUAAUCAAUGUAGUUGGAAAUUUAUUGGGCUAAUUGCUUUCUAAUUUAUUGGAGAGUGGAAAC
...((....))....(((((((...((((((..(((((......)))))..))))))....(((((...))))).......)))))))..(((((((((((....))))))))))).... (-30.14 = -29.90 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:26 2006