Locus 5711

Sequence ID 3L_DroMel_CAF1
Location 15,594,565 – 15,594,685
Length 120
Max. P 0.529839
window9037

overview

Window 7

Location 15,594,565 – 15,594,685
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.33
Mean single sequence MFE -28.62
Consensus MFE -20.48
Energy contribution -22.20
Covariance contribution 1.72
Combinations/Pair 1.07
Mean z-score -2.53
Structure conservation index 0.72
SVM decision value -0.01
SVM RNA-class probability 0.529839
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15594565 120 + 23771897
AGUGUUGCUGGCCAACCGAAAGCGGUAAAUUGGAAGGCAAAUCAGUUAAAAUAAUAACAAUGGGAUGGCUGCAACAAUGACGCCGGUGGUAACAGCAACAACACAAAGAUAAACAACUCA
..((((((((((((.(((...(((....((((..((.((..(((((((......))))..)))..)).))....))))..))))))))))..)))))))).................... ( -32.20)
>DroSec_CAF1 17830 120 + 1
AGUGUUGCUGGCCAAGCGAAAGCGGUAAAUUGGAUGGCAAAUCAGUUAAAAUAAUAACAAUGGGAUGGCCGCAACAAUGACGCCGGCAGUAACAGCAACAACACAAAGAUAAACAACUCA
..(((((((((((..((....))(((..((((..((((...(((((((......))))..)))....))))...))))...)))))).....)))))))).................... ( -34.30)
>DroSim_CAF1 17862 120 + 1
AGUGUUGCUGGCCAACCGAAAGCGGUAAAUUGGAUGGCAAAUCAGUUAAAAUAAUAACAAUGGUAUGGCCGCAACAAUGACGCCGGUAGUAACAGCAACAACACAAAGAUAAACAACUCA
..((((((((..(.((((...(((....((((..((((..((((((((......))))..))))...))))...))))..))))))).)...)))))))).................... ( -31.50)
>DroEre_CAF1 18006 118 + 1
AGUUUUACG--GCAACCAAAAGCGGUAAAUUGGAAGGCAAAUCAGUUAAAAUAAUAACAAUGGGAUGGCCGCAACAAUGACGCCGGUAGUAACAGCAACAACACAAAGAUAAACAACUCA
.((((..((--((.(((......)))..((((...(((...(((((((......))))..)))....)))....))))...))))((.((....)).))...........))))...... ( -20.90)
>DroYak_CAF1 19222 119 + 1
AGUGUUACGG-GCAGCCAAAAGCGGUAAAUUGGAAGGCAAAUCAGUUAAAAUAAUAACAAUGGGAUGGCCGCAACAAUGACGCCGGUAGUAACAGCAACAACACAAAGAUAAACAACUCA
.(((((((.(-((.(((......)))..((((...(((...(((((((......))))..)))....)))....))))...))).)).((....))...)))))................ ( -24.20)
>consensus
AGUGUUGCUGGCCAACCGAAAGCGGUAAAUUGGAAGGCAAAUCAGUUAAAAUAAUAACAAUGGGAUGGCCGCAACAAUGACGCCGGUAGUAACAGCAACAACACAAAGAUAAACAACUCA
..((((((((..(.((((...(((....((((...(((...(((((((......))))..)))....)))....))))..))))))).)...)))))))).................... (-20.48 = -22.20 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:21 2006