Locus 571

Sequence ID 3L_DroMel_CAF1
Location 1,641,862 – 1,641,965
Length 103
Max. P 0.680574
window873

overview

Window 3

Location 1,641,862 – 1,641,965
Length 103
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 71.53
Mean single sequence MFE -36.62
Consensus MFE -11.05
Energy contribution -12.58
Covariance contribution 1.53
Combinations/Pair 1.28
Mean z-score -2.12
Structure conservation index 0.30
SVM decision value 0.30
SVM RNA-class probability 0.680574
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1641862 103 - 23771897
AGGUCCCGUGGGGCAAAGGCUUCCAAGUCCGAUGAGAAGGCUCCGCAACAGGAAAAUGUCAUGCGAAGCCGUUCUCGCGAGCGC---AAGGAUACGAGAUCAUCCC
.((((.((((((((....)))))...((((...(((((((((.(((((((......)))..)))).)))).)))))((....))---..))))))).))))..... ( -37.70)
>DroSec_CAF1 3939 100 - 1
AGGUCCCGUGGGGCAAAGGCUUGCAAGUCCGAUGAGAAGGCUCCGCAGAAGGAAAAUGUCAUGCGCAGCCGUUCUCGCGAGCGC---AAGGAUACGAAA---UCCA
..((((....))))....((((((.(......)(((((((((.((((....((.....)).)))).)))).)))))))))))..---..((((.....)---))). ( -35.50)
>DroSim_CAF1 3777 100 - 1
AGGUCCCGUGGGGCAAAGGCUUCCAAGUCCGAUGAGAAGGCUCCGCAGCAGGAAAAUGUCAUGCGCAGCCGUUCUCGCGAGCGC---AAGGAUACGAAA---UCCA
..((((....))))...((.(((...((((...(((((((((.(((((((......)))..)))).)))).)))))((....))---..))))..))).---.)). ( -34.90)
>DroEre_CAF1 3742 100 - 1
AGGUCCCGUGGUCCAAAGGCUGCCAAGUCCGAUGAGAAGGCUGCGCAGCAGGAAAAUGUCACGCGCAGCCGUUCUCGCGAGCGC---AAGGAUACGAAG---UCCA
.((.(.((((.(((...((((....))))((.((((((((((((((.(((......)))...)))))))).)))))))).....---..)))))))..)---.)). ( -39.70)
>DroAna_CAF1 3669 103 - 1
AAACACCGAGAAGUAAACAACUCAAAGGCCUGCGAAGCUGUCCCUCAGCAGGGAAAUCCCUUCCGCAGCCGUUCCCGGGAGCGCCGAAAGGACACCAAG---UCCC
.......(((..(....)..)))...((((((((..((((.....))))((((....))))..)))))..((((....)))))))....((((.....)---))). ( -35.00)
>DroPer_CAF1 4071 100 - 1
AAAUCCCGCGAUCCAACAGCUACCAAAGCUGAAGACAAUGGCACAUCGCGGGAGAAUCCCUUCCGGAGCAGGUCCCGCGAACGUCGCAGGGAAUUAAAG------C
...(((((((((....(((((.....)))))..............((((((((...(((.....))).....))))))))..))))).)))).......------. ( -36.90)
>consensus
AGGUCCCGUGGGGCAAAGGCUUCCAAGUCCGAUGAGAAGGCUCCGCAGCAGGAAAAUGUCAUGCGCAGCCGUUCUCGCGAGCGC___AAGGAUACGAAA___UCCA
..........................((((........((((.((((...((......)).)))).))))((((....)))).......))))............. (-11.05 = -12.58 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:36 2006