Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,592,323 – 15,592,443 |
Length | 120 |
Max. P | 0.890792 |
Location | 15,592,323 – 15,592,443 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -30.50 |
Energy contribution | -30.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 1.00 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15592323 120 - 23771897 CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU ((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50) >DroSec_CAF1 15720 120 - 1 CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU ((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50) >DroSim_CAF1 15669 120 - 1 CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU ((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50) >DroEre_CAF1 15732 120 - 1 CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU ((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50) >DroYak_CAF1 16949 120 - 1 CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU ((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... ( -30.50) >consensus CCUGCGGGAGCUGACUUUGGGCUUUUUUACAAUUAUGAAUAUUUGUUUGUUCGACAGAGCGACAGGCCGCAUUGUUGUUUCCCGCUGCUCUGAUUUAUUUAUGCAUUUGGCUAUAUUUUU ((.(((((((..(((..(((((((....((((.((....)).))))((((((....)))))).))))).))..)))..)))))))(((..(((.....))).)))...)).......... (-30.50 = -30.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:10 2006